View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_3 (Length: 612)
Name: NF7906_low_3
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 594
Target Start/End: Original strand, 43579787 - 43580367
Alignment:
| Q |
10 |
tcgaagaatattatgaggatgacatccaaacatggaaagaaagtgaagctttgctggattaatagtaaggaaggcaacagttatgcacatatgtatcaag |
109 |
Q |
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| T |
43579787 |
tcgaataaaattatgaggatgacatccaaacatggaaagaaagtgaagctttgctggattaatagtaaggaaggcaacagttatgcacatatgtatcaag |
43579886 |
T |
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| Q |
110 |
gaagattctacnnnnnnnnnnnnnnnnnnnnaccgatgccctattatcggtacaatagttatgatcccatgtacgcccctcatcaacatggttatgcttt |
209 |
Q |
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| T |
43579887 |
gaagattctaccctcctcctcctcc------accgatgccctattatcggtacaatagttatgatcccatgtacgcccctcatcaacatggttatgcttt |
43579980 |
T |
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| Q |
210 |
atatgcaccaccttactatcggtattagtgcatatttggattgacagtgaaattgtcagagtcacagtgaattgttattttagcaaaaattatactttaa |
309 |
Q |
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| T |
43579981 |
atatgcaccaccttactatcagtattagtgcatatttggattgatagtgagattgttagagtcacggtgaattgttattatagcaaaaactatactttaa |
43580080 |
T |
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| Q |
310 |
aacttcaacggtattatgactttgtcaaacttatcgttcatccaaacaccgttctgtattttttatggtgnnnnnnnnnnnnnnaaggtcttctactcta |
409 |
Q |
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| T |
43580081 |
aatttcaacggtattatgactttgtcaaacttatcgttcatccaagcaccgttctgtattttttatggtg----ttttttttttaaggtcttctactcta |
43580176 |
T |
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| Q |
410 |
gcgcatgtactagcaacgatatcataaagttgcttaaaattttgtcaccggcct------attaagtaccccctttcattgagtttgaaaatatcctaat |
503 |
Q |
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| T |
43580177 |
gcgcatgtactagcaacgatatcataaagttgcttaaaattttgtcaccggcctcagatgattaagtaccccctttcattgagtttgtaaatatcctaat |
43580276 |
T |
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| Q |
504 |
cctctttctgtgaggtttgttcaacattattgctattattgtgaaccaggttttgtaaggttcataattctaaactttttatgttaactat |
594 |
Q |
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| T |
43580277 |
cctctttctgtgaggtttgttcaacattattgctattattgtgaaccaggttttgtaaggttcataattctaaactttttatgttaactat |
43580367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 43678095 - 43678036
Alignment:
| Q |
37 |
aaacatggaaagaaagtgaagctttgctggattaatagtaaggaaggcaacagttatgca |
96 |
Q |
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| T |
43678095 |
aaacatggaaagaaagtggagctttgctggattaatagtatggaaggcaacaattatgca |
43678036 |
T |
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