View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_31 (Length: 202)
Name: NF7906_low_31
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 6668945 - 6668774
Alignment:
| Q |
12 |
ttggtgttgtaactactgctcaaaagtccaatctacaaataaaaatcaaacaactaagaaatttgaaaccatgggattactgcaataacaattaatatag |
111 |
Q |
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| T |
6668945 |
ttggtgttgtaactactgcacaaaagtccaatctacaaataaaaatcaaacaactaagaaatttgaaaccatgggattactgcaataacaattaatatag |
6668846 |
T |
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| Q |
112 |
tggatatagcagatacatctagatacatgagttcatcacctcaacaattgacataaatcccttggtgcagta |
183 |
Q |
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| T |
6668845 |
tggatatagcagatacatctagatacatgagttcatcacctcaacaattgacataaatcccttggtgcagta |
6668774 |
T |
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Back To:
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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 17258273 - 17258164
Alignment:
| Q |
34 |
aaagtccaatctacaaataaaaatcaaacaactaagaaatttgaaaccatgggattactgcaataacaattaatatagtggatatagcagatacatctag |
133 |
Q |
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| T |
17258273 |
aaagaccaatctataaataaaaatcaaa-aactaagaaatttgaaagcatgggattactgcaataaaaaataatatagtggatatagcagatacatctag |
17258175 |
T |
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| Q |
134 |
atacatgagtt |
144 |
Q |
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| T |
17258174 |
atacatgagtt |
17258164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 39483937 - 39483994
Alignment:
| Q |
115 |
atatagcagatacatctagatacatgagttcatcacctcaacaattgacataaatccc |
172 |
Q |
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| T |
39483937 |
atatatcagatacatctagatacagtagtttatcacctcaacaattgacataaatccc |
39483994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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