View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_4 (Length: 591)
Name: NF7906_low_4
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 184 - 574
Target Start/End: Original strand, 8190750 - 8191141
Alignment:
| Q |
184 |
tctacagctttagtactagtgaaagtgatgtagatagtgaatatccaaatgaaacaactgagaacccgtgtattcagctatttcattcaatagaataann |
283 |
Q |
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| T |
8190750 |
tctacagctttagtacttgtgaaagtgatgtagatagtgaatatccaaatgaaacaactgagaacccgtgtattcagctatttcattcaatagaataaat |
8190849 |
T |
|
| Q |
284 |
nnnnnnaaaaagaatcaaataagagattatatgttccttaagattatgccctttaatatttttgctacagggtggcaagttacctttgtaagcttgataa |
383 |
Q |
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| T |
8190850 |
tttttaaaaaagaatcaaataagagattatatgttccttaagattatgccctttaatatttttgctacagggtggaaagttacctttgtaagcttgataa |
8190949 |
T |
|
| Q |
384 |
gacatttcacaaccagatcagaaaacttctgatttctggtagcaaatgactcatttggtgcaggtgaaagccaccttgatggatctagtggacgtaaaag |
483 |
Q |
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| T |
8190950 |
gacatttcacaaccagatcagaaaacttctgatttctggtagcaaatgactcatttggtgcaggtgaaggccaccttgatggatctagtggacgtaaaag |
8191049 |
T |
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| Q |
484 |
attaattaggacaacaaaggatgaagttcgatctgcattatcctgtattgatgatc-actagtcagtcgactaacttgtacttatgatttac |
574 |
Q |
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| T |
8191050 |
attaattaggacaacaaaggatgcagttcgatctgcattatcctgtattgatcatcaactagtcagtcaactaacttgtacttatgatttac |
8191141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 8190567 - 8190685
Alignment:
| Q |
1 |
tttcaatgatgatacaatgacttgaacagatggggagttttgccaatgcaactgaggttagggagcatttaacctacactaggcagaagacgtttttgaa |
100 |
Q |
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| T |
8190567 |
tttcaatgatgatacaatgacttgaacagatggggagttttgccaatgcaactgaggttagggagcctttaacctacactaggcagaagacgtttttgaa |
8190666 |
T |
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| Q |
101 |
gaggaaagctgcatctatg |
119 |
Q |
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| T |
8190667 |
gaggaaagctgcatctatg |
8190685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 335 - 560
Target Start/End: Original strand, 42348715 - 42348940
Alignment:
| Q |
335 |
tttaatatttttgctacagggtggcaagttacctttgtaagcttgataagacatttcacaaccagatcagaaaacttctgatttctggtagcaaatgact |
434 |
Q |
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| T |
42348715 |
tttaagatttttgctactgggtggcaagttacctttgtaagcttgataaggcatttcacaaccagatcagaaaacttctggtttctggtagcaagtgact |
42348814 |
T |
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| Q |
435 |
catttggtgcaggtgaaagccaccttgatggatctagtggacgtaaaagattaattaggacaacaaaggatgaagttcgatctgcattatcctgtattga |
534 |
Q |
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| T |
42348815 |
catttggtgcaggtgaaggccacctcgatggatctagcggacgtaaaagattaattaggacaacaaaggatgaagttcgatctgcattatcctgtaatga |
42348914 |
T |
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| Q |
535 |
tgatcactagtcagtcgactaacttg |
560 |
Q |
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| T |
42348915 |
tgatcactagtcagtaaactaacttg |
42348940 |
T |
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