View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_5 (Length: 516)
Name: NF7906_low_5
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 30 - 483
Target Start/End: Complemental strand, 33677048 - 33676593
Alignment:
| Q |
30 |
aacaagcaaaataaataattaaagaatgctagcaacatactctttattgtttgatgaaattcatgcagaccacatcagttaagaagtgagacccacacga |
129 |
Q |
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| T |
33677048 |
aacaagcaaaataaataattaaagaatgctagcaacatactctttattgtttgatgaaattcatgcagaccacatcagttaagaagtgagacccacacga |
33676949 |
T |
|
| Q |
130 |
cttagtgggacacgtgcatttagcccaataataaacaatgtgacagaaaatgtattgttagcctttctttgaataatttagtccatgagtgaatactatt |
229 |
Q |
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| T |
33676948 |
cttagtgggacatgtgcatttagcccaataataaataatgtgacagaaaatgtattgttagcctttctttgaataatttagtccatgagtgaatactatt |
33676849 |
T |
|
| Q |
230 |
caataatttaggctgtgagtgtgtgctattcaataacaaaagaacctatggcaaccattttatcaactacaagatttagatgctaaaataatatctttga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33676848 |
caataatttaggctgtgagtgtgtgctattcaataacaaaagaacctatggcaaccattttatcaactacaagatttagatgctaaaataatatctttga |
33676749 |
T |
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| Q |
330 |
aaatttggggcatcttagccatctctcctccacctttagccctcacacaacaacattcactcattccataatcaattcaacattcaaaagcatattccat |
429 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33676748 |
aaatttggggcatcttagctatctctcctccacctttagccctcacacaacaacattcactcattccataatcaattcaacattcaaaagcatattccat |
33676649 |
T |
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| Q |
430 |
gatactgacaaagtatcaagtatcaagataccccgagttta--atgatataatgat |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33676648 |
gatactgacaaagtatcaagtatcaagataccccgagtttaatatgatataatgat |
33676593 |
T |
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