View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_6 (Length: 479)
Name: NF7906_low_6
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 81 - 464
Target Start/End: Complemental strand, 19078055 - 19077672
Alignment:
| Q |
81 |
cactaagacaatattgttatggcatccttggagagataaaaacgagaggtggactgatctgaatttgttagaagacgttaattttgatcaaagtgaaatg |
180 |
Q |
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|||||||| | ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19078055 |
cactaagatagtattgttatggcatccttggagagataaacatgagaggtggattgatctgaatttgttagaagacgttaattttgatcaaagtgaaatg |
19077956 |
T |
|
| Q |
181 |
atgattgagataactaacgcatcatcgaatttgattattcctttgttgaggtaccaaagggaatggttaccatgggatttgagcaggatgttctataact |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19077955 |
atgattgagataactaacgcatcatcgaatttgattattcctttgttgaggtaccaaagggaatggttaccgtgggatttgagcaggatgttctataact |
19077856 |
T |
|
| Q |
281 |
agtggaggaatccttgccggtgaaaagggtatgtagataagtattcatggaatttcccttgttcttgctaaacttgaattataataatatttgtaattga |
380 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19077855 |
agtggaggaatccttgccggtgaaaaggttatgtagataagtattcatggaatttcccttgttcttgctaaacttgaattataataatatttgtaattca |
19077756 |
T |
|
| Q |
381 |
tgtttagaaccaaaaattaactgattcatctgactataaagagtcattatctaaacgtgaatttctatcacattggttgtaatt |
464 |
Q |
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| T |
19077755 |
tgtttagaaccaaaaattaactgattcatctgactataaagagttattatctaaacgtgaatttctatcacattggttgtaatt |
19077672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 242 - 464
Target Start/End: Complemental strand, 19079619 - 19079397
Alignment:
| Q |
242 |
aatggttaccatgggatttgagcaggatgttctataactagtggaggaatccttgccggtgaaaagggtatgtagataagtattcatggaatttcccttg |
341 |
Q |
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||||||||||||| |||||||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| | ||| |
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| T |
19079619 |
aatggttaccatgagatttgagcaagaagttctatcactagtggaggaatcctagccggtgaaaagggtatgtagatatgtatttctggaattttctttg |
19079520 |
T |
|
| Q |
342 |
ttcttgctaaacttgaattataataatatttgtaattgatgtttagaaccaaaaattaactgattcatctgactataaagagtcattatctaaacgtgaa |
441 |
Q |
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|| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19079519 |
ttgttgctaaacttgaattataataacatttataattcatgtttagaaccaaaaatgaactgattcatctgactatagagagtcattatctaaacgtgaa |
19079420 |
T |
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| Q |
442 |
tttctatcacattggttgtaatt |
464 |
Q |
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||||||||||||||||||||||| |
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| T |
19079419 |
tttctatcacattggttgtaatt |
19079397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 353
Target Start/End: Original strand, 17408846 - 17408989
Alignment:
| Q |
212 |
tgattattcctttgttgaggtaccaaagggaatggttaccatgggatttg-agcaggatg-ttctataactagtggaggaatccttgccggtgaaaaggg |
309 |
Q |
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||||| |||| ||| ||||||||||||||||||||||| |||||| |||| ||||||| | ||| |||| || |||||||||||||| | ||||| ||| |
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| T |
17408846 |
tgattgttccgttgctgaggtaccaaagggaatggttagcatgggctttgaagcaggaggaatctgtaaccagaggaggaatccttgctgatgaaatggg |
17408945 |
T |
|
| Q |
310 |
tatgtagataagtattcatggaatttcccttgttcttgctaaac |
353 |
Q |
| |
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|||| || || |||||| | |||| ||||||| ||| |||||| |
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| T |
17408946 |
tatggggaaaactattcaagcaattgcccttgtcctttctaaac |
17408989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 43015812 - 43015854
Alignment:
| Q |
18 |
aagaaataattccacatttgtgcaactctgaaaagaaagaaag |
60 |
Q |
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| T |
43015812 |
aagaaataattccacatttgtgcaactctgaaaagaaagaaag |
43015854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 43016000 - 43016042
Alignment:
| Q |
18 |
aagaaataattccacatttgtgcaactctgaaaagaaagaaag |
60 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016000 |
aagaaataattccacatttgtgcaactctgaaaagaaagaaag |
43016042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 23735560 - 23735599
Alignment:
| Q |
21 |
aaataattccacatttgtgcaactctgaaaagaaagaaag |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
23735560 |
aaataattccacatttgtgcaactctgaaaagaaagaaag |
23735599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 18309772 - 18309814
Alignment:
| Q |
18 |
aagaaataattccacatttgtgcaactctgaaaagaaagaaag |
60 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18309772 |
aagaaataatttcacatttgtgcaactctgaaaagaaagaaag |
18309814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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