View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_7 (Length: 462)
Name: NF7906_low_7
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 40741750 - 40742189
Alignment:
| Q |
1 |
tatgttgatggttcaaattctgatttagcagaagagttgaagtgttttggagtgtgtttgtgtgctgatgagcttgttggtttggattgtgttgagaagt |
100 |
Q |
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| T |
40741750 |
tatgttgatggttcaaattctgatttagcagaagagttgaagtgctttggagtgtgtttgtgtgctgatgagcttgttggtttggattgtgttgagaagt |
40741849 |
T |
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| Q |
101 |
atatgccatatagggtaggaatgcagtttggaatggatcaagatgttcctcctagtgagttcactgttctgagtccaagttacaagggaaattttagctt |
200 |
Q |
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| T |
40741850 |
atatgccatatagggtaggaatgcagtttggaatggatcaagatgttcctcctagtgagttcactgttctgagtccaagttacaagggaaattttagctt |
40741949 |
T |
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| Q |
201 |
ttatgttcctgcaagatgctacaaaccttgtttgtcattggaatatcacaattggtggaagaaatcaaaggtggatgattctgttctgttgagtgataaa |
300 |
Q |
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| T |
40741950 |
ttatgttcctgcaagatgctacaaaccttgtttgtcattggaatatcacaattggtggaagaaatcaaaggtggatgattctgttctgttgagtgataaa |
40742049 |
T |
|
| Q |
301 |
aattgtatgttagatgtagtgatgattgcaaagcaatattgtnnnnnnnnnnnnnnnnnnaatcatgtatcaattgactctgttgaaagtagtttgaaaa |
400 |
Q |
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| T |
40742050 |
aattgtatgttagatgtagtgatgattgcaaagcaatattgt------gaagaagaagaaaatcatgtatcaattgactctgttaaaagtagtttgaaaa |
40742143 |
T |
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| Q |
401 |
ggaaatcatcaaccaatgaagaaagcaaggataaggaagtggatag |
446 |
Q |
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| T |
40742144 |
ggaaatcatcaaccaatgaagaaagcaaggataaggaagtggatag |
40742189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 10326494 - 10326160
Alignment:
| Q |
1 |
tatgttgatggttcaaattctgatttagcagaagagttgaagtgttttggagtgtgtttgtgtgctgatgagcttgttggtttggattgt----gttgag |
96 |
Q |
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||||||||||||||||||| | ||||||||||||| ||||||||| ||| |||| |||||||||||||||||| |||||| |||||| |
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| T |
10326494 |
tatgttgatggttcaaattgtcatttagcagaagatttgaagtgt----------gttattgtgttgatgagcttgttggttttgattgtacatgttgag |
10326405 |
T |
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| Q |
97 |
aagtatatgccatatagggtaggaatgcagtttggaatggatcaagatgttcctcctagtgagttcactgttctgagtccaagttacaagggaaatttta |
196 |
Q |
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| T |
10326404 |
aagtatatgccatatagattaggaatgcagtttggaattgatcaagacgttcctcctagtgagttcactgttctgaatccaagtgacatgggaaatttta |
10326305 |
T |
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| Q |
197 |
gcttttatgttcctgcaagatgctacaaaccttgtttgtcattggaatatcacaattggtggaagaaatcaaaggtggatgattctgttctgttgagtga |
296 |
Q |
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|||||||||||||| ||||||| | || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||| |
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| T |
10326304 |
gcttttatgttcctacaagatg-tttaagccttgtgtgtcattggaatatcacaattggtggaagaaattaaaggtggatgattctgatttgttgattga |
10326206 |
T |
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| Q |
297 |
taaaaattgtatgttagatgtagtgatgattgcaaagcaatattgt |
342 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
10326205 |
taaaaattgtatgttacatgtagttatgattgcaaagcaatattgt |
10326160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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