View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7907_high_2 (Length: 437)

Name: NF7907_high_2
Description: NF7907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7907_high_2
NF7907_high_2
[»] chr1 (1 HSPs)
chr1 (1-297)||(52232747-52233042)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 52232747 - 52233042
Alignment:
Q  1 atgaaacctgaaagagaggtaacgaaatagagagcaccgtggagaccaccgatggcgaggcgaccgaaaccctcagcacgaccggcaatggacctcaaat 100  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52232747 atgaaacctgaaagggaggtaacgaaatagagaccaccgtggagaccaccgatggcgaggcgaccgaaaccctcagcacgaccggcaatggacctcaaat 52232846  T
Q  101 tggaatctgcatctccgtatggctgcatcatcaatcaatcttcttcaatacaagggattcttctttttcaccgattcaa-aattgattatttattttaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  52232847 tggaatctgcatctccgtatggctgcatcatcaatcaatcttcttcaatacaagggattcttctttttcaccgattcaataattgattatttattttata 52232946  T
Q  200 ggttaaattaattaaggagatactaactatttatgtatactaaattgattgcttaaattacacttttacacttcccttcctcttctgtaaaacacgtt 297  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  52232947 ggttaaattaattaaggagatactaactatttatg--tactaaattgattgcttaaattacactttaacacttccctttctcttctgtaaaacacgtt 52233042  T

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