View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7907_high_3 (Length: 404)

Name: NF7907_high_3
Description: NF7907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7907_high_3
NF7907_high_3
[»] chr3 (19 HSPs)
chr3 (319-404)||(22368272-22368357)
chr3 (319-404)||(22468308-22468393)
chr3 (319-404)||(22630799-22630884)
chr3 (319-404)||(22632225-22632310)
chr3 (335-404)||(22354173-22354242)
chr3 (323-404)||(22358362-22358443)
chr3 (319-389)||(22443114-22443184)
chr3 (337-404)||(22431512-22431578)
chr3 (118-165)||(22437914-22437961)
chr3 (123-215)||(22439904-22439998)
chr3 (322-404)||(22635863-22635945)
chr3 (270-323)||(22359155-22359208)
chr3 (270-323)||(22369057-22369110)
chr3 (322-402)||(22436996-22437076)
chr3 (125-161)||(22449356-22449392)
chr3 (323-402)||(22615621-22615700)
chr3 (337-403)||(22458850-22458916)
chr3 (337-403)||(22481831-22481897)
chr3 (356-404)||(21945682-21945730)
[»] chr8 (1 HSPs)
chr8 (356-404)||(27294606-27294654)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 22368357 - 22368272
Alignment:
Q  319 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  22368357 agagggaagagcacaccgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgaca 22368272  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 22468393 - 22468308
Alignment:
Q  319 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||    
T  22468393 agagggaagagcagagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgaca 22468308  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 22630884 - 22630799
Alignment:
Q  319 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  22630884 agagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgaca 22630799  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 22632310 - 22632225
Alignment:
Q  319 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  22632310 agagggaagagcagatcgcacagttgtctccattattggaatgggaggactggggaaaaccactctagccaagaaagtttttgaca 22632225  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 335 - 404
Target Start/End: Complemental strand, 22354242 - 22354173
Alignment:
Q  335 cgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  |||||||||||||    
T  22354242 cgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccagaaaagtttttgaca 22354173  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 323 - 404
Target Start/End: Complemental strand, 22358443 - 22358362
Alignment:
Q  323 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    ||||||||| | || ||| |||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  22358443 ggaagagcagaccggacaattgtctccattgttggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgaca 22358362  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 22443184 - 22443114
Alignment:
Q  319 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgcca 389  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  22443184 agagggaagagaagaccgcacagttgtctccattgttggaatgggaggattgggaaaaaccactctagcca 22443114  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 22431578 - 22431512
Alignment:
Q  337 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  22431578 cacagtggtctccattgt-ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgaca 22431512  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 22437961 - 22437914
Alignment:
Q  118 acacttcacattgcatagccaattgcccattcaaagctaaattattta 165  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  22437961 acacctcacattgcatagccaattgcccattcaaaactaaattattta 22437914  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 22439998 - 22439904
Alignment:
Q  123 tcacattgcatagccaattgcccattcaaagc-----taaattatttaactagttagatgaatgatctgaagagctgggtatcttatctattccgaat 215  Q
    |||||||||||||||||||| | ||||||| |     ||||||||||||||||| ||||||||||||  ||||||| ||| |||||||||||||||||    
T  22439998 tcacattgcatagccaattggcgattcaaaactaatttaaattatttaactagtgagatgaatgatc--aagagct-ggtgtcttatctattccgaat 22439904  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 404
Target Start/End: Complemental strand, 22635945 - 22635863
Alignment:
Q  322 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    |||||||||| | || ||| ||||||||||  |||||||||||||||  ||||||| |||||| || ||||||||||||||||    
T  22635945 gggaagagcagaccggacaattgtctccatctttggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgaca 22635863  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 22359208 - 22359155
Alignment:
Q  270 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 323  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22359208 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22359155  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 22369110 - 22369057
Alignment:
Q  270 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 323  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22369110 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22369057  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 402
Target Start/End: Complemental strand, 22437076 - 22436996
Alignment:
Q  322 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttga 402  Q
    |||||||| | ||||  |||||||||| ||||| ||||||||||| |  |||||||  ||||| |||||||||||||||||    
T  22437076 gggaagagtagagcgtgcagttgtctctattgtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttga 22436996  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 22449356 - 22449392
Alignment:
Q  125 acattgcatagccaattgcccattcaaagctaaatta 161  Q
    |||||||||||||||||||||||||||| ||||||||    
T  22449356 acattgcatagccaattgcccattcaaaactaaatta 22449392  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 402
Target Start/End: Complemental strand, 22615700 - 22615621
Alignment:
Q  323 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttga 402  Q
    ||||||| | ||||||| ||||||||  | || ||||||||||| | ||| |||| ||||||||||||||| ||||||||    
T  22615700 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttga 22615621  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 22458916 - 22458850
Alignment:
Q  337 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgac 403  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| |||||||||    
T  22458916 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgac 22458850  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 22481897 - 22481831
Alignment:
Q  337 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgac 403  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| |||||||||    
T  22481897 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgac 22481831  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 21945682 - 21945730
Alignment:
Q  356 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    ||||||||||| |  ||||||| |||||| |||||||||||||||||||    
T  21945682 ggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgaca 21945730  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 27294606 - 27294654
Alignment:
Q  356 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 404  Q
    |||||||||||||  ||||||| |||||| | |||||||||||||||||    
T  27294606 ggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgaca 27294654  T

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