View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7907_high_5 (Length: 298)
Name: NF7907_high_5
Description: NF7907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7907_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 3140073 - 3139794
Alignment:
| Q |
1 |
atatcattcattgatgaagccaaaattacatccgtaattatttctaatttaccaaatttgcttctcggtttgaaatcaaatttgaagtacatcaaaactg |
100 |
Q |
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| T |
3140073 |
atatcattcattgatgaagccaaaattacatccgtaattatttctaatttaccaaatttgcttctcggtttgaaatcaaatttgaagtacatcaaaactg |
3139974 |
T |
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| Q |
101 |
tgttgtactaataccactcatctaatatagaatatttgagtaattaaacacacgcattataatttaaatcagtttaggaaggtaatgatattcaggcaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3139973 |
tgttgtactaataccactcatctaatatagaatatttgagtaattaaccacacgcattatagtttaaatcagtttaggaaggtaatgatattcaggcaca |
3139874 |
T |
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| Q |
201 |
aatcaagcagtgtataccttccatacatcgtttcaaatttcaatcatcattgctattgtaattataattcaaataataac |
280 |
Q |
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| T |
3139873 |
aatcaagcagtgcataccttccatacatcgtttcaaatttcaatcattattgctattgtaattataattcaaataataac |
3139794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 3157646 - 3157565
Alignment:
| Q |
196 |
gcacaaatcaagcagtgtataccttccatacatcgtttcaaatttcaatcatcattgctattgtaattataattcaaataataa |
279 |
Q |
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| T |
3157646 |
gcacaaatcaagcagtgcataccttccatacatcgtttaaactttcgat--acttagctattgtaattataattcaaataataa |
3157565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 23851178 - 23851252
Alignment:
| Q |
167 |
aatcagtttaggaaggtaatgatattcaggcacaaatcaagcagtgtataccttccatacatcgtttcaaatttc |
241 |
Q |
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| T |
23851178 |
aatcagtttaggaagacaatgatatttaggcacaaatcaagcagtgcatacatgtcatacatcgtttcaactttc |
23851252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 23851084 - 23851140
Alignment:
| Q |
22 |
aaaattacatccgtaattatttctaatttaccaaatttgcttctcggtttgaaatca |
78 |
Q |
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| T |
23851084 |
aaaattacatccgtaattgtttccaagttacttattttgcttctcgatttgaaatca |
23851140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 23853216 - 23853272
Alignment:
| Q |
22 |
aaaattacatccgtaattatttctaatttaccaaatttgcttctcggtttgaaatca |
78 |
Q |
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|||| ||||||||||||| |||| || ||||| | ||||| |||||||||||||||| |
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| T |
23853216 |
aaaagtacatccgtaattgtttccaagttacctattttgcctctcggtttgaaatca |
23853272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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