View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7908_low_1 (Length: 383)
Name: NF7908_low_1
Description: NF7908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7908_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 45862325 - 45861980
Alignment:
| Q |
20 |
tatggaggttgagcgtgtagtaaaagctgtgaagccagataatgtggttgttgagctatgcagaagcaggcaagtactagtattttcttttcagaacatg |
119 |
Q |
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| T |
45862325 |
tatggatgttgagcgtgtagtaaaagctgtgaagccagataatgtggttgttgagctatgcagaagcaggcaagtactagtattttcttttcagaacatg |
45862226 |
T |
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| Q |
120 |
aattttaatctaaattattataccagttaaaataatcctataactataaaatgttaatgtataagtctaaagttgatatcaaatgcattcttgaaatatt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
45862225 |
aattttaatctaaattattataccagttaaaataatcctataactgtaaaatgttaatgtacatgtctaaagttgatatcaaatgcattcttgaaatatt |
45862126 |
T |
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| Q |
220 |
tacctagtttcaaatgcatctcctcaaaatttaccaatttaatgtcattatagccctgcgaatgttgcatataggtagctgttctggtgagcttaggagc |
319 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45862125 |
tacctagtttcaaatccatctcctcaaaatttaccaatttaatgtcattatagccctgcgaatgttgcatataggtagctgttctggtgagcttaggagc |
45862026 |
T |
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| Q |
320 |
accaaagtggttttaagaggagattaaatgttcaaattctgaaact |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45862025 |
accaaagtggttttaagaggagattaaatgttcaaattctgaaact |
45861980 |
T |
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