View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7908_low_3 (Length: 247)

Name: NF7908_low_3
Description: NF7908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7908_low_3
NF7908_low_3
[»] chr8 (2 HSPs)
chr8 (1-151)||(17126209-17126359)
chr8 (19-152)||(24969433-24969566)
[»] chr3 (2 HSPs)
chr3 (7-147)||(12794100-12794239)
chr3 (17-62)||(15046531-15046576)
[»] chr2 (2 HSPs)
chr2 (3-56)||(27402424-27402477)
chr2 (113-151)||(27402525-27402563)
[»] chr5 (1 HSPs)
chr5 (19-143)||(10178100-10178224)
[»] scaffold0959 (1 HSPs)
scaffold0959 (19-141)||(540-661)
[»] chr6 (2 HSPs)
chr6 (29-87)||(14797149-14797207)
chr6 (106-148)||(14567802-14567844)
[»] scaffold0135 (1 HSPs)
scaffold0135 (100-141)||(31331-31372)
[»] chr4 (1 HSPs)
chr4 (100-141)||(9220680-9220721)
[»] scaffold0111 (1 HSPs)
scaffold0111 (19-62)||(31561-31604)
[»] chr1 (2 HSPs)
chr1 (3-62)||(30822076-30822135)
chr1 (112-147)||(35565506-35565541)
[»] chr7 (1 HSPs)
chr7 (47-151)||(15010343-15010447)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 17126209 - 17126359
Alignment:
Q  1 aaaaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgt 100  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17126209 aaaaatatcatacttgacacttatgaaggcatgaacatatgactcaataatgcatatgttcacccactaaattgttatcattaacatcgtcaccttttgt 17126308  T
Q  101 acatacattcgtcatcaatatcgtcgtcattttgcatgtaagaattcgtca 151  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17126309 acatgcattcgtcatcaatatcgtcgtcattttgcatgtaagaattcgtca 17126359  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 24969433 - 24969566
Alignment:
Q  19 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 118  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||| | |  |||||||  |||||  | || |||  |||  ||||| ||||| ||| |||    
T  24969433 acttatgaatgcatgaacatatgactcaataatgcatacgttcaacaaacaaatcgtcgtcattttcgtcttcatttttcatacatgcattcatcaacaa 24969532  T
Q  119 tatcgtcgtcattttgcatgtaagaattcgtcaa 152  Q
    || |||||||||||||||| ||||||||| ||||    
T  24969533 taacgtcgtcattttgcatataagaattcatcaa 24969566  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 12794100 - 12794239
Alignment:
Q  7 atcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatac 106  Q
    ||||||||||||||||| |  | |||||||||||||||||| |||||| ||||||| | || ||||||| ||||||  | |  |||  |||  ||||| |    
T  12794100 atcctacttgacacttatgttg-catgaacatatgactcaacaatgcacatgttcaacaacaaaatcgtcatcattttcgtattcatttttcatacatgc 12794198  T
Q  107 attcgtcatcaatatcgtcgtcattttgcatgtaagaattc 147  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  12794199 attcatcatcaatatcgtcgtcattttgcatgtaataattc 12794239  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 15046576 - 15046531
Alignment:
Q  17 acacttacgaaggcatgaacatatgactcaataatgcatatgttca 62  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  15046576 acacttatgaatgcatgaacatatgactcaacaatgcatatgttca 15046531  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 27402424 - 27402477
Alignment:
Q  3 aaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcata 56  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  27402424 aaatatcctacttgacacttactaatgcatgaacatatgattcaataatgcata 27402477  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 27402525 - 27402563
Alignment:
Q  113 catcaatatcgtcgtcattttgcatgtaagaattcgtca 151  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  27402525 catcaatatcgtcaccattttgcatgtaagaattcgtca 27402563  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 10178224 - 10178100
Alignment:
Q  19 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 118  Q
    ||||| ||| ||||||||||||||||||| |||||||| ||||| |    || |||| ||||||  | || |||  |||| ||||| ||||| |||||||    
T  10178224 acttatgaatgcatgaacatatgactcaacaatgcatacgttcaacatacaattcgtcatcattttcgtcttcattttttatacatgcattcatcatcaa 10178125  T
Q  119 tatcgtcgtcattttgcatgtaaga 143  Q
    || | ||||||||||||||||||||    
T  10178124 taacatcgtcattttgcatgtaaga 10178100  T

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Target: scaffold0959 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 540 - 661
Alignment:
Q  19 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 118  Q
    ||||| ||| ||||||| ||| ||||||| |||||||| ||||| | | |||||||| |||||| || || |||  |||  ||||| ||||| |||||||    
T  540 acttatgaatgcatgaatataagactcaacaatgcataagttcaacaa-taaatcgtcatcatttacgtcttcatttttcatacatgcattcatcatcaa 638  T
Q  119 tatcgtcgtcattttgcatgtaa 141  Q
     | ||||||||||||||||||||    
T  639 caacgtcgtcattttgcatgtaa 661  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 14797149 - 14797207
Alignment:
Q  29 gcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacat 87  Q
    |||||||||||||||||||||||||||| |||||| ||  || |||| |||||||||||    
T  14797149 gcatgaacatatgactcaataatgcatacgttcacacaacaagtcgtcatcattaacat 14797207  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 14567844 - 14567802
Alignment:
Q  106 cattcgtcatcaatatcgtcgtcattttgcatgtaagaattcg 148  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||    
T  14567844 cattcgtcatcaatatcatcgtcattttgcacgtaataattcg 14567802  T

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Target: scaffold0135 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 31331 - 31372
Alignment:
Q  100 tacatacattcgtcatcaatatcgtcgtcattttgcatgtaa 141  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  31331 tacatgcattcgtcatcaataacgtcgtcattttgcatgtaa 31372  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 9220680 - 9220721
Alignment:
Q  100 tacatacattcgtcatcaatatcgtcgtcattttgcatgtaa 141  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  9220680 tacatgcattcgtcatcaataacgtcgtcattttgcatgtaa 9220721  T

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Target: scaffold0111 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 31604 - 31561
Alignment:
Q  19 acttacgaaggcatgaacatatgactcaataatgcatatgttca 62  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||    
T  31604 acttatgaatgcatgaacatatgactcaataatgcatacgttca 31561  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 30822076 - 30822135
Alignment:
Q  3 aaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttca 62  Q
    |||||||| |||  ||| ||| ||| |||||||||||||||||||||||||||| |||||    
T  30822076 aaatatccgactcaacatttatgaatgcatgaacatatgactcaataatgcatacgttca 30822135  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 35565506 - 35565541
Alignment:
Q  112 tcatcaatatcgtcgtcattttgcatgtaagaattc 147  Q
    |||||||||||||||||||||||||||||| |||||    
T  35565506 tcatcaatatcgtcgtcattttgcatgtaataattc 35565541  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 15010447 - 15010343
Alignment:
Q  47 ataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaatatcgtcgtcattttgcatgtaagaatt 146  Q
    |||||||||  ||||||| |  ||||| | ||||||||||||||||| || | || ||   ||| |||||||||||||||||  ||||||||||| || |    
T  15010447 ataatgcatccgttcacctaacaaatcatcatcattaacatcgtcactttctataaatgtgttcatcatcaatatcgtcgtctctttgcatgtaataact 15010348  T
Q  147 cgtca 151  Q
    |||||    
T  15010347 cgtca 15010343  T

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