View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7909_high_13 (Length: 295)
Name: NF7909_high_13
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 13735766 - 13735497
Alignment:
| Q |
15 |
aatttggatgccaagaagacattattttgtgtggagttttcgatggacatggaccttggggacactttgtatctaaaagggtccgaaaaatgttaccaac |
114 |
Q |
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| T |
13735766 |
aatttggatgccaagaagacattattttgtgtggagttttcgatggacatggaccttggggacactttgtatctaaaagggtccgaaaaatgttaccaaa |
13735667 |
T |
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| Q |
115 |
atttttgctcttcaattggcaggaaaatctggctgaaaaatcacttgacctgagttttaagatggaaacagacacgaatctccatgagtatgatatatgg |
214 |
Q |
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| T |
13735666 |
atttttgctcttcaattggcaggaaaatctggctgaaaaatcacttgacctgagttttaagatggaaacagacatgaatctccatgagtatgatatatgg |
13735567 |
T |
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| Q |
215 |
aagcagtcgtacataaagacttttgcggcaattgatcaggatctaaagcagcatactggaattgattcat |
284 |
Q |
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| T |
13735566 |
aagcagtcgtacataaagacttttgcggcaattgatcaggatctaaagcggcatactggaattgattcat |
13735497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 49916795 - 49916929
Alignment:
| Q |
15 |
aatttggatgccaagaagacattattttgtgtggagttttcgatggacatggaccttggggacactttgtatctaaaagggtccgaaaaatgttaccaac |
114 |
Q |
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| T |
49916795 |
aatttggatgccaacaagacatgatgttttgtggagtttttgatgggcatggtccttggggacattttgtagccaaaagggttaggaaattaataccagc |
49916894 |
T |
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| Q |
115 |
atttttgctcttcaattggcaggaaaatctggctg |
149 |
Q |
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| T |
49916895 |
tattttgctatgcaattggcaaaaaaatctggctg |
49916929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 37242096 - 37242161
Alignment:
| Q |
15 |
aatttggatgccaagaagacattattttgtgtggagttttcgatggacatggaccttggggacact |
80 |
Q |
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|||||||||||||||| ||||| || || ||||| |||| |||||||||||||||||||| |||| |
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| T |
37242096 |
aatttggatgccaagaggacatgatcttctgtgggatttttgatggacatggaccttggggtcact |
37242161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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