View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7909_high_14 (Length: 283)
Name: NF7909_high_14
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 6753221 - 6752955
Alignment:
| Q |
1 |
atattttagtcagaacaaaaatgaaacattccaaataaaacaaaagtgta-aacagaaattgctactgttataaacatgaaaatgaagggtaagattcat |
99 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753221 |
atattttagtcaaaacaaaaatgaaacattccaaataaaaaaaaagtgtagaacagaaattgctactgttataaacatgaaaatgaagggtaagattcat |
6753122 |
T |
|
| Q |
100 |
atattacaaacatgnnnnnnncattgagttaggactcaacttgtcacagcaaa--gttaccaaccatgctttgataggagattttgttgttgatattatt |
197 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753121 |
atattacaaacatgaaaaaaacattgagttaggactca-cttgtcacagcgagaggttaccaaccatgctttgataggagattttgttgttgatattatt |
6753023 |
T |
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| Q |
198 |
taccaaccaaattgttgaatttttagtttgataggagatgttaaactgacatgtttggatgttctctg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753022 |
taccaaccaaattgttgaatttttagtttgataggagatgttaaactgacatgtttggatgttctctg |
6752955 |
T |
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