View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7909_high_18 (Length: 239)

Name: NF7909_high_18
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7909_high_18
NF7909_high_18
[»] chr5 (11 HSPs)
chr5 (17-239)||(39472222-39472444)
chr5 (42-219)||(39454850-39455027)
chr5 (36-219)||(39458075-39458258)
chr5 (37-214)||(39460456-39460636)
chr5 (27-239)||(39475705-39475920)
chr5 (36-219)||(39486670-39486859)
chr5 (31-219)||(39451203-39451394)
chr5 (36-219)||(39470538-39470721)
chr5 (120-236)||(39464319-39464435)
chr5 (36-239)||(39483465-39483671)
chr5 (120-219)||(43312315-43312414)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 39472222 - 39472444
Alignment:
Q  17 aggttcctctatgactgcgctcctcgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaatggagtccttgccgct 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39472222 aggtccctctatgactgcgctcctcgaagctcagaaaccaaacgtcaaacaagtagtatctaacctcattaccagatcagaaaatggagtccttgccgct 39472321  T
Q  117 tttgttgttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39472322 tttgttgttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggat 39472421  T
Q  217 tgagttttcatctttacactctt 239  Q
    |||||||||||||||||||||||    
T  39472422 tgagttttcatctttacactctt 39472444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 39454850 - 39455027
Alignment:
Q  42 gaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgttctgcacaa 141  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||  |   || || ||||||||| || ||||| ||||||||||||| |||||||     
T  39454850 gaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagcaagtggagtcctcgcagctttcgttgttgacatgtcctgcacag 39454949  T
Q  142 acatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 219  Q
     |||||||||||||||||||||||||||  ||||||| || ||||||||||||||| |||| || |||||||| ||||    
T  39454950 ccatgattgatgttgccaaagagttctccatccctacactcgtcttcttcacttccagtgtagctttccttggtttga 39455027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 39458258 - 39458075
Alignment:
Q  36 ctcctcgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgttct 135  Q
    |||||| ||||||||||||||||||||||| |||  || || ||||||| ||    | |||||||||||||||| || || ||  |||||||||||||||    
T  39458258 ctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcactaaagcaccagaaaatggagtcctagctgcattcattgttgacatgttct 39458159  T
Q  136 gcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 219  Q
    |||| | ||||||||||||||  ||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  39458158 gcaccaccatgattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttga 39458075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 39460456 - 39460636
Alignment:
Q  37 tcctcgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaa---tggagtccttgccgcttttgttgttgacatgtt 133  Q
    ||||||||||||||||| |||||||||||||||  |||||||| |||| ||| |    ||||||   ||||  |||  | || |||||||||||||||||    
T  39460456 tcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactactactagagaaaaacatggaaccctcacagcctttgttgttgacatgtt 39460555  T
Q  134 ctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttgg 214  Q
    |||||| || ||||||||| |||||||||| || || ||||||||||||||||||||||||||||||||||| | ||||||    
T  39460556 ctgcactaaaatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttgg 39460636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 239
Target Start/End: Original strand, 39475705 - 39475920
Alignment:
Q  27 atgactgcgctcctcgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcag---aaaatggagtccttgccgcttttgttg 123  Q
    ||||| || |||||||||||||||||||||||||| ||||||| ||| || ||||||| ||| |||  ||   || |||||  ||| ||||| || ||||    
T  39475705 atgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttg 39475804  T
Q  124 ttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattgagttt 223  Q
    |||||||||||||||| | ||||||  |||||||||| ||||||  |||||||||||| || ||||||||||| |||||||| | |||||| |||| | |    
T  39475805 ttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttggtttgaatct 39475904  T
Q  224 tcatctttacactctt 239  Q
    | | ||||||||||||    
T  39475905 ttacctttacactctt 39475920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 39486670 - 39486859
Alignment:
Q  36 ctcctcgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaa------tggagtccttgccgcttttgttgttgaca 129  Q
    ||||| |||||||||||||||||||||||||||| |||||| ||||||| ||| |||  || | |      ||||  ||||||||| || ||||||||||    
T  39486670 ctccttgaagctcagaaaccaaacgtcaaacaagctgtatccaacctcactactagagaaggacaaccacctggacaccttgccgccttcgttgttgaca 39486769  T
Q  130 tgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 219  Q
    |||||||||| | |||||||||| |||||||||| || ||  ||||| ||||  |||||||||||||||||||||| || ||||| ||||    
T  39486770 tgttctgcaccaccatgattgatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttggtttga 39486859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 39451203 - 39451394
Alignment:
Q  31 ctgcgctcctcgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcag---aaaatggagtccttgccgcttttgttgttga 127  Q
    |||| ||||||||||||||||||||||| ||||||||||  || |||||||||| |||  ||  ||   ||||||||||||| ||| |  | ||||||||    
T  39451203 ctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtcctcgccaccatcgttgttga 39451302  T
Q  128 catgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 219  Q
    |||||||||||| | |||||||||| |||||||||| || || || |||| ||| |||||||||||||| || ||||| | |||||| ||||    
T  39451303 catgttctgcaccaccatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttga 39451394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 39470721 - 39470538
Alignment:
Q  36 ctcctcgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgttct 135  Q
    |||||||||||||| ||| ||||||||||||||| | | || ||||||| |||  ||  | || |||||  ||| |||||| |  |||||||||||||||    
T  39470721 ctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttct 39470622  T
Q  136 gcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 219  Q
    |||||||||||||||||||||||||||| || ||  ||||| || |||| || |||||||||||  |||| |||||||| ||||    
T  39470621 gcacaaacatgattgatgttgccaaagaattttccctccctgcgtttgtgttgttcacttccggcattgctttccttggtttga 39470538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 39464435 - 39464319
Alignment:
Q  120 gttgttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 219  Q
    |||||||||||||||||||| |||||||||||||||||||| || || || |||||| || |||| |||||||||||  ||||||| |||||||| ||||    
T  39464435 gttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttga 39464336  T
Q  220 gttttcatctttacact 236  Q
     | ||||| || |||||    
T  39464335 atcttcatattcacact 39464319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 239
Target Start/End: Original strand, 39483465 - 39483671
Alignment:
Q  36 ctcctcgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcag---aaaatggagtccttgccgcttttgttgttgacatgt 132  Q
    ||||| |||||||||||||||||| | | ||||| ||| || ||||||| ||| |||  ||   || |||||  |||  |||| || |||||||||||||    
T  39483465 ctccttgaagctcagaaaccaaacataatacaagctgtctccaacctcactactagagaaggacaacatggacacctctccgccttcgttgttgacatgt 39483564  T
Q  133 tctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattgagttttcatcttta 232  Q
    ||||||| | |||||||||||||||||| ||||||  |||||||||||| || |||| ||||| | ||||||| | |||||| |||| | || ||||| |    
T  39483565 tctgcaccaccatgattgatgttgccaatgagttcaatgtccctacgctcgttttctacactttcagtgttgcttcccttggtttgaatctttatcttca 39483664  T
Q  233 cactctt 239  Q
    |||||||    
T  39483665 cactctt 39483671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 43312414 - 43312315
Alignment:
Q  120 gttgttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 219  Q
    |||||||||||||||||||| | |||||||||||| || || || ||   ||||||| | || |||| |||||||||||||||||| |||||||| ||||    
T  43312414 gttgttgacatgttctgcaccaccatgattgatgtagctaatgactttggtgtcccttccctcgtctacttcacttccggtgttgctttccttggtttga 43312315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University