View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7909_high_2 (Length: 516)
Name: NF7909_high_2
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 15 - 506
Target Start/End: Original strand, 4235785 - 4236276
Alignment:
| Q |
15 |
cagagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaatttgttgcttcaaagatcttctaccagacaca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4235785 |
cagagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaattcgttgcttcaaagatcttctaccagacaca |
4235884 |
T |
|
| Q |
115 |
gcctagacaacatggtagtaattccattaataatgtaagagattcatatgaaaaaataatcaacaaaggaagtgaccatggtaataacagtgcagccccc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4235885 |
gcctagacaacatggtagtaattccattaataatgtaagagattcatatgaaaaaataatcaacaaaggaagtgaccatggtaataacagtgcagccccc |
4235984 |
T |
|
| Q |
215 |
aacaatgtagctcatgtggaatgctacaatgcttgttatacaaattatgaccatatgcatgttggtcatagtagggaaagtactccacaactgattatac |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4235985 |
aacaatgtagctcatgtggaatgctacaatgcttgttatacaaattatgacaatatgcatgttggtcatagtagggaaagcactccacaactgattatac |
4236084 |
T |
|
| Q |
315 |
caaacatggctgttcaaagtaatggaactattattcccttatcaatggatcatgcaaacaaagtaagagtgctggagagaaagtaacattggaagagctt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236085 |
caaacatggctgttcaaagtaatggaactattattcccttatcaatggatcatgcaaacaaagtaagagtgctggagagaaagtaacattggaagagctt |
4236184 |
T |
|
| Q |
415 |
cttggtagaccaacagtgattcttttgctaattttactaatcagataaccatttacatttatgtattatatggtggatttattgatgtccat |
506 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4236185 |
cttggtagaccaacagtgattcttttactaattttactaatcagataaccatttacatttatgtattatatggtggatttatttatgtccat |
4236276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 38887074 - 38887183
Alignment:
| Q |
15 |
cagagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaatttgttgcttcaaagatcttctaccagacaca |
114 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||||||||| | |||||||| || | ||| || ||||| || | ||| || | |||||||| ||||| |
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| T |
38887074 |
cagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagaggagaaagaaggggaattggtagtttccaaagttttctaccaaacaca |
38887173 |
T |
|
| Q |
115 |
gcctagacaa |
124 |
Q |
| |
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|||||||||| |
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| T |
38887174 |
gcctagacaa |
38887183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 59 - 205
Target Start/End: Complemental strand, 6589159 - 6589015
Alignment:
| Q |
59 |
aatgaagaagaaagagatggagaatttgttgcttcaaagatcttctaccagacacagcctagacaacatggtagtaattccattaataatgtaagagatt |
158 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
6589159 |
aatgaagaagaaatagatggagaatttgttgcttcaaagatcttctaccagacacagcctagacaaca---tcgtaattccattaataatgtaagagatt |
6589063 |
T |
|
| Q |
159 |
catatg-aaaaaataatcaacaaaggaagtgaccatggtaataacagt |
205 |
Q |
| |
|
|||| | |||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
6589062 |
cataagaaaaaaataatgaacaaaggaagtggccatggtaataacagt |
6589015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 268 - 477
Target Start/End: Complemental strand, 6588984 - 6588785
Alignment:
| Q |
268 |
tatgcatgttggtcatagtagggaaagtactccacaactgattataccaaacatggctgttcaaagtaatggaactattattcccttatcaatggatcat |
367 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | ||||| |||||||||||||| ||| || ||||||||||||||| |||||||||||||||| |
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| T |
6588984 |
tatgcatgttggtcatagtaggga--------cacaaataattattccaaacatggctgtccaaggtgatggaactattattcgcttatcaatggatcat |
6588893 |
T |
|
| Q |
368 |
gcaaacaaagtaagagtgctggagagaaagtaacattggaagagcttcttggtagaccaacagtgattcttttgctaattttactaatcagataaccatt |
467 |
Q |
| |
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||||||||||||||||| | |||||||||||| ||||| ||||| ||||||||||| |||||||||||||||| | || |||| ||||||||||||||| |
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|
| T |
6588892 |
gcaaacaaagtaagagtaccggagagaaagtagcattgaaagagtttcttggtagaacaacagtgattcttttaccaa--ttacaaatcagataaccatt |
6588795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 34829950 - 34829843
Alignment:
| Q |
17 |
gagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaatttgttgcttcaaagatcttctaccagacacagc |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| ||||||||||| | |||||| ||||| |||| ||||||| | || ||||| ||||| | |
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| T |
34829950 |
gagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaggtgttttaccaaacacaac |
34829851 |
T |
|
| Q |
117 |
ctagacaa |
124 |
Q |
| |
|
|| ||||| |
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|
| T |
34829850 |
ctcgacaa |
34829843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 28948805 - 28948724
Alignment:
| Q |
17 |
gagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaatttgttgcttcaaaga |
98 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||||| ||||||||||| | |||||| ||||| |||| |||||||| |
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|
| T |
28948805 |
gagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
28948724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 43015191 - 43015297
Alignment:
| Q |
17 |
gagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaatttgttgcttcaaagatcttctaccagacacagc |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||| | ||| ||||| |||||| ||||||||| || || |||||||||| |
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| T |
43015191 |
gagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacacagc |
43015290 |
T |
|
| Q |
117 |
ctagaca |
123 |
Q |
| |
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| ||||| |
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|
| T |
43015291 |
caagaca |
43015297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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