View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7909_high_4 (Length: 455)
Name: NF7909_high_4
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 41588601 - 41589022
Alignment:
| Q |
17 |
cacactatttgctttgtccatttgcagtgttgacttggtcttgaccactcaaataattggacacggttgatacagtacaatacaccaaatatgaatgaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41588601 |
cacactatttgctttgtccatttgcagtgttgacttggtcttgaccactcaaataattggacacggttgatacagtacaatacaccaaatatgaatgaat |
41588700 |
T |
|
| Q |
117 |
tcagccacttatattaaccaacctcgtacacaaatcaaaaatattattttctctcaaatcaaatccacactaatttgatataacccagaatttttgttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41588701 |
tcagccacttatattaaccaacctcgtacacaaatcaaaaatattattctctctcaaatcaaatccacactaattcgatataacccagaatttttgttgt |
41588800 |
T |
|
| Q |
217 |
tatagatggacaaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttccactgttcttggttttataaacaaatttctcatggaaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41588801 |
tatagatggacaaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttccactgttcttggttttataaacaaatttctcatggaaga |
41588900 |
T |
|
| Q |
317 |
tgatgactcagaggaagactacaatatgttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaagaagac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41588901 |
tgatgactcagaggaagactacaatatgttccaacatcatgaacatgaagtgtcttccactgttcttggttctataaaccaatttctcatggaagaagac |
41589000 |
T |
|
| Q |
417 |
tttgaaaaagagtacactcagt |
438 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41589001 |
tttgaaaaagagtacactcagt |
41589022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 221 - 434
Target Start/End: Original strand, 41556154 - 41556376
Alignment:
| Q |
221 |
gatggacaaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttccactgtt---------cttggttttataaacaaatttctcatg |
311 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||| ||| ||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
41556154 |
gatggacaaaagagttgttggtccacaccatgaacatagtgagagtgaattctcttccactatttccactattcttggttttataaacaaatttctcatg |
41556253 |
T |
|
| Q |
312 |
gaagatgatgactcagaggaagactacaatatgttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaag |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41556254 |
gaagatgatgacatagaggaagactacaatatgttccaacatcatgaacatgaggagtcttccactgttcttggttctataaaccaatttctcatggaag |
41556353 |
T |
|
| Q |
412 |
aagactttgaaaaagagtacact |
434 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
41556354 |
aagactttgaaaaagaatacact |
41556376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 213 - 434
Target Start/End: Original strand, 41569852 - 41570073
Alignment:
| Q |
213 |
ttgttatagatggacaaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttccactgttcttggttttataaacaaatttctcatgg |
312 |
Q |
| |
|
||||| || ||||||||| || |||||||| ||| ||||||||||||| ||||||||||| ||||| || ||||||||| | ||| |||||||||||||| |
|
|
| T |
41569852 |
ttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagtgagagtgaattctcttcccctattcttggttatgtaagcaaatttctcatgg |
41569951 |
T |
|
| Q |
313 |
aagatgatgactcagaggaagactacaatatgttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaaga |
412 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||||| || |||||||| |||||||| ||||||||||||||| |
|
|
| T |
41569952 |
aagatgatgacatagaggaagactacaatatgttccaacacaatgaacatgatgggtcttccaatgctcttggttatataaaccgatttctcatggaaga |
41570051 |
T |
|
| Q |
413 |
agactttgaaaaagagtacact |
434 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
41570052 |
agactttgaaaaagaatacact |
41570073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 41578874 - 41578950
Alignment:
| Q |
17 |
cacactatttgctttgtccatttgcagtgttgacttggtcttg-accactcaa--ataattggacacggttgataca |
90 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||| |||||| || |||||||||||||||||||||| |
|
|
| T |
41578874 |
cacattatttgctttgtccatttgcagcgttgacttggtcttgaaccacttaaatataattggacacggttgataca |
41578950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 434
Target Start/End: Original strand, 41579046 - 41579079
Alignment:
| Q |
401 |
tctcatggaagaagactttgaaaaagagtacact |
434 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
41579046 |
tctcatggaagaagactttgaaaaggagtacact |
41579079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University