View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7909_low_11 (Length: 366)

Name: NF7909_low_11
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7909_low_11
NF7909_low_11
[»] chr4 (5 HSPs)
chr4 (18-65)||(19842787-19842834)
chr4 (18-62)||(49403351-49403395)
chr4 (18-57)||(19842211-19842250)
chr4 (18-61)||(40087253-40087296)
chr4 (19-57)||(55604172-55604210)
[»] chr5 (6 HSPs)
chr5 (13-63)||(8618678-8618728)
chr5 (13-61)||(8619459-8619507)
chr5 (18-62)||(32780864-32780908)
chr5 (13-57)||(17071086-17071130)
chr5 (18-62)||(21013115-21013159)
chr5 (17-61)||(24116603-24116647)
[»] chr1 (7 HSPs)
chr1 (18-63)||(36726448-36726493)
chr1 (19-63)||(8679819-8679863)
chr1 (18-62)||(8680713-8680757)
chr1 (18-62)||(51031953-51031997)
chr1 (13-62)||(45215497-45215546)
chr1 (17-57)||(43741645-43741685)
chr1 (17-57)||(51032843-51032883)
[»] chr7 (3 HSPs)
chr7 (13-57)||(46972571-46972615)
chr7 (18-71)||(42665122-42665175)
chr7 (18-63)||(46294571-46294616)
[»] chr3 (2 HSPs)
chr3 (18-57)||(51885831-51885870)
chr3 (18-63)||(40037015-40037060)
[»] chr2 (6 HSPs)
chr2 (18-57)||(2916284-2916323)
chr2 (19-57)||(2915478-2915516)
chr2 (13-59)||(7907195-7907241)
chr2 (17-63)||(23673286-23673332)
chr2 (17-62)||(3963051-3963096)
chr2 (18-63)||(16027611-16027656)
[»] chr8 (1 HSPs)
chr8 (18-55)||(9177457-9177494)
[»] chr6 (1 HSPs)
chr6 (18-67)||(13218858-13218907)


Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 19842787 - 19842834
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaacctttat 65  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  19842787 caaaattgggtgaaagtgcagggaccaaacatacatttaaacctttat 19842834  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 49403395 - 49403351
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaacctt 62  Q
    |||||||||  |||||||||||||| |||||||||||||||||||    
T  49403395 caaaattggacgaaaatgcagggactaaacacacatttaaacctt 49403351  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 19842250 - 19842211
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaa 57  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  19842250 caaaattgggtgaaagtgcatggaccaaacacacatttaa 19842211  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 40087253 - 40087296
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaacct 61  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||    
T  40087253 caaaattgagtgaaagtgcagggactaaacacacatttaaacct 40087296  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 55604172 - 55604210
Alignment:
Q  19 aaaattgggtgaaaatgcagggaccaaacacacatttaa 57  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  55604172 aaaattgggcgaaagtgcagggaccaaacacacatttaa 55604210  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 8618728 - 8618678
Alignment:
Q  13 aatatcaaaattgggtgaaaatgcagggaccaaacacacatttaaaccttt 63  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  8618728 aatatcaaaattggatgaaagtgcagggactaaacacacatttaaaccttt 8618678  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 8619459 - 8619507
Alignment:
Q  13 aatatcaaaattgggtgaaaatgcagggaccaaacacacatttaaacct 61  Q
    |||| ||||||||||||||| ||||||||| |||| |||||||||||||    
T  8619459 aataccaaaattgggtgaaagtgcagggactaaacgcacatttaaacct 8619507  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 32780908 - 32780864
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaacctt 62  Q
    |||||| |||||||| |||||||||||||||||||||||| ||||    
T  32780908 caaaatggggtgaaagtgcagggaccaaacacacatttaagcctt 32780864  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 17071086 - 17071130
Alignment:
Q  13 aatatcaaaattgggtgaaaatgcagggaccaaacacacatttaa 57  Q
    |||| |||||||| || ||||||||||||| ||||||||||||||    
T  17071086 aataccaaaattgagtaaaaatgcagggactaaacacacatttaa 17071130  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 21013159 - 21013115
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaacctt 62  Q
    |||||||| || ||| ||||||||| |||||||||||||||||||    
T  21013159 caaaattgagtaaaagtgcagggactaaacacacatttaaacctt 21013115  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 24116603 - 24116647
Alignment:
Q  17 tcaaaattgggtgaaaatgcagggaccaaacacacatttaaacct 61  Q
    |||||| |||| |||| ||||||||| ||||||||||||||||||    
T  24116603 tcaaaactgggcgaaagtgcagggactaaacacacatttaaacct 24116647  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 36726448 - 36726493
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaaccttt 63  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  36726448 caaaattagatgaaaatgcagggaccaaacacacatttaaaccttt 36726493  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 8679863 - 8679819
Alignment:
Q  19 aaaattgggtgaaaatgcagggaccaaacacacatttaaaccttt 63  Q
    |||||| ||||||| |||||||||||||||||||||||| |||||    
T  8679863 aaaattaggtgaaagtgcagggaccaaacacacatttaagccttt 8679819  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 8680713 - 8680757
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaacctt 62  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
T  8680713 caaaattgggtggaagtgcagggaccaaacacacatttaagcctt 8680757  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 51031997 - 51031953
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaacctt 62  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||    
T  51031997 caaaattgggtgaaagtgcagggatcaaacacacatttaagcctt 51031953  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 45215546 - 45215497
Alignment:
Q  13 aatatcaaaattgggtgaaaatgcagggaccaaacacacatttaaacctt 62  Q
    |||| ||||| |||| |||| ||||||||| |||||||||||||||||||    
T  45215546 aataccaaaactgggcgaaagtgcagggactaaacacacatttaaacctt 45215497  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 43741645 - 43741685
Alignment:
Q  17 tcaaaattgggtgaaaatgcagggaccaaacacacatttaa 57  Q
    ||||||||| |||||| ||||||||| ||||||||||||||    
T  43741645 tcaaaattgagtgaaagtgcagggactaaacacacatttaa 43741685  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 51032843 - 51032883
Alignment:
Q  17 tcaaaattgggtgaaaatgcagggaccaaacacacatttaa 57  Q
    |||||||||| |||||||| ||||| |||||||||||||||    
T  51032843 tcaaaattggatgaaaatgtagggatcaaacacacatttaa 51032883  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 46972571 - 46972615
Alignment:
Q  13 aatatcaaaattgggtgaaaatgcagggaccaaacacacatttaa 57  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||||    
T  46972571 aataccaaaattgggtgaaagtgcagggactaaacacacatttaa 46972615  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 42665175 - 42665122
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaacctttatattaat 71  Q
    ||||| |||| |||| ||||||||| |||||||||||||||||| ||| |||||    
T  42665175 caaaactgggcgaaagtgcagggactaaacacacatttaaacctatattttaat 42665122  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 46294571 - 46294616
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaaccttt 63  Q
    ||||| |||| |||| ||||||||| ||||||||||||||||||||    
T  46294571 caaaactgggcgaaagtgcagggactaaacacacatttaaaccttt 46294616  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 51885870 - 51885831
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaa 57  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  51885870 caaaattgggtcaaagtgcagggaccaaacacacatttaa 51885831  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 40037015 - 40037060
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaaccttt 63  Q
    ||||||| | ||||||||||||||||||  ||||||||||||||||    
T  40037015 caaaatttgatgaaaatgcagggaccaatgacacatttaaaccttt 40037060  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 2916284 - 2916323
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaa 57  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  2916284 caaaattgggtgaaagtgcagggactaaacacacatttaa 2916323  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 2915516 - 2915478
Alignment:
Q  19 aaaattgggtgaaaatgcagggaccaaacacacatttaa 57  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  2915516 aaaattgggtgaaagtgcagggactaaacacacatttaa 2915478  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 7907241 - 7907195
Alignment:
Q  13 aatatcaaaattgggtgaaaatgcagggaccaaacacacatttaaac 59  Q
    |||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  7907241 aataccaaaatttggtgaaagtgcatggaccaaacacacatttaaac 7907195  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 23673332 - 23673286
Alignment:
Q  17 tcaaaattgggtgaaaatgcagggaccaaacacacatttaaaccttt 63  Q
    |||||||| | ||||| |||||| |||||||||||||||||||||||    
T  23673332 tcaaaattagttgaaagtgcaggaaccaaacacacatttaaaccttt 23673286  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 3963096 - 3963051
Alignment:
Q  17 tcaaaattgggtgaaaatgcagggaccaaacacacatttaaacctt 62  Q
    |||||||| | ||||||||||||||||||  |||||||||||||||    
T  3963096 tcaaaatttgatgaaaatgcagggaccaatgacacatttaaacctt 3963051  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 16027611 - 16027656
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaaccttt 63  Q
    ||||| |||| |||| ||||||||| ||||||||||||||||||||    
T  16027611 caaaactgggcgaaagtgcagggactaaacacacatttaaaccttt 16027656  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 9177457 - 9177494
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacattt 55  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  9177457 caaaattaggtgaaagtgcagggaccaaacacacattt 9177494  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 13218907 - 13218858
Alignment:
Q  18 caaaattgggtgaaaatgcagggaccaaacacacatttaaacctttatat 67  Q
    ||||| |||| |||| ||||||||| |||||||||||||||||| |||||    
T  13218907 caaaactgggcgaaagtgcagggactaaacacacatttaaacctatatat 13218858  T

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