View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7909_low_13 (Length: 341)

Name: NF7909_low_13
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7909_low_13
NF7909_low_13
[»] chr6 (2 HSPs)
chr6 (1-341)||(21005630-21005970)
chr6 (217-271)||(21005990-21006044)
[»] scaffold0557 (5 HSPs)
scaffold0557 (212-274)||(5969-6031)
scaffold0557 (212-271)||(5885-5944)
scaffold0557 (138-178)||(5969-6009)
scaffold0557 (212-274)||(5021-5083)
scaffold0557 (211-271)||(5107-5167)
[»] scaffold0442 (4 HSPs)
scaffold0442 (212-274)||(9363-9425)
scaffold0442 (212-271)||(9279-9338)
scaffold0442 (212-274)||(8386-8448)
scaffold0442 (138-178)||(9363-9403)
[»] scaffold0115 (3 HSPs)
scaffold0115 (138-178)||(46896-46936)
scaffold0115 (212-271)||(46961-47020)
scaffold0115 (234-274)||(46896-46936)
[»] chr1 (1 HSPs)
chr1 (212-315)||(41336427-41336527)


Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 21005630 - 21005970
Alignment:
Q  1 atactcccacatcgacggaaaggtctattcaatacatgttgatcaaatggttgtgtgaataaaaacacaaacatgaatgttatttcacctgccaacatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005630 atactcccacatcgacggaaaggtctattcaatacatgttgatcaaatggttgtgtgaataaaaacacaaacatgaatgttatttcacctgccaacatta 21005729  T
Q  101 ttccaactcctcttgttgttatccaaaactttaagcctcaaatctatcctgcaagtgttcaacaggagaagaacaacaccgtcatgattgctatggtttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21005730 ttccaactcctcttgttgttatccaaaactttaagcctcaaatctaccctgcaagtgttcaacaggagaagaataacaccgtcatgattgctatggtttc 21005829  T
Q  201 aactcctagtagtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005830 aactcctagtagtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacat 21005929  T
Q  301 cctggtgttgatcaaccagagaagaacaacacgagtactat 341  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  21005930 cctggtgttgatcaaccagagaagaacaacatgagtactat 21005970  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 21005990 - 21006044
Alignment:
Q  217 aatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 271  Q
    |||||||||||||||| ||||||||| | || |||||||||||||||||||||||    
T  21005990 aatcaaaacatgcagcgtcaaatctatcctgaaagtgttcaacaaaacaagaaca 21006044  T

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Target: scaffold0557 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 6031 - 5969
Alignment:
Q  212 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 274  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||  | ||||||||||    
T  6031 gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacaggagaagaacaaca 5969  T

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Target: scaffold0557; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 5944 - 5885
Alignment:
Q  212 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 271  Q
    |||| ||||||| |||||| | ||||||||||| || |||||||||||||||||||||||    
T  5944 gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaaca 5885  T

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Target: scaffold0557; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 6009 - 5969
Alignment:
Q  138 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 178  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  6009 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 5969  T

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Target: scaffold0557; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 5021 - 5083
Alignment:
Q  212 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 274  Q
    |||| |||||||||||||| | |||||||||| ||| ||||||||||||  | ||||||||||    
T  5021 gtgttaatcaaaacatgcaccatcaaatctacaatgaaagtgttcaacatgagaagaacaaca 5083  T

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Target: scaffold0557; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 5107 - 5167
Alignment:
Q  211 agtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 271  Q
    ||||| ||| ||| |||| ||| ||||||||||| |  |||||||||||||||||||||||    
T  5107 agtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaaca 5167  T

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Target: scaffold0442 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 9425 - 9363
Alignment:
Q  212 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 274  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||  | ||||||||||    
T  9425 gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacagtagaagaacaaca 9363  T

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Target: scaffold0442; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 9338 - 9279
Alignment:
Q  212 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 271  Q
    |||| ||||||| |||||| | ||||||||||| || |||||||||||||||||||||||    
T  9338 gtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaaca 9279  T

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Target: scaffold0442; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 8386 - 8448
Alignment:
Q  212 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 274  Q
    |||| |||||||||||||| | |||||||||||||  ||||||||||||  | ||||||||||    
T  8386 gtgttaatcaaaacatgcaccatcaaatctaccataaaagtgttcaacatgagaagaacaaca 8448  T

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Target: scaffold0442; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 9403 - 9363
Alignment:
Q  138 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 178  Q
    ||||||||| | |||||||||||||||| ||||||||||||    
T  9403 tcaaatctaccatgcaagtgttcaacagtagaagaacaaca 9363  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 46896 - 46936
Alignment:
Q  138 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 178  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  46896 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 46936  T

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Target: scaffold0115; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 46961 - 47020
Alignment:
Q  212 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 271  Q
    |||| ||||||| |||||| | ||||||||||| || ||||||||||||| |||||||||    
T  46961 gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaaca 47020  T

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Target: scaffold0115; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 46896 - 46936
Alignment:
Q  234 tcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 274  Q
    |||||||||||||||||||||||||||  | ||||||||||    
T  46896 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 46936  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 41336427 - 41336527
Alignment:
Q  212 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacatcctggtgttga 311  Q
    |||| ||||||| |||||| | ||||||||||  || |||||||||||| ||||||   |||||| ||| |||||| ||| |||||  |||||||||| |    
T  41336427 gtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaag---aacaccatcatgagtactatggttccaactcctggtgttaa 41336523  T
Q  312 tcaa 315  Q
    ||||    
T  41336524 tcaa 41336527  T

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