View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7909_low_19 (Length: 275)
Name: NF7909_low_19
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 49126154 - 49125905
Alignment:
| Q |
3 |
gagatgaaaaactgagcagcaataacaaaatttatgatattgcgagggacttaaatcatggaataatgttggatgtcacgaaaattgtttcacaactcgg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49126154 |
gagatgaaaaactgagcagcaataacaaaatttatgatattgcgagggacttaaatcatggaataatgttggatgtcacgaaaattgtttcacaactcgg |
49126055 |
T |
|
| Q |
103 |
ccatgaaggcattcaaggaaacatgtaactatattattcactataccctccaagttttccgacaaagacacttgttagttggttaatttattagctggag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49126054 |
ccatgaaggcattcaaggaaacatgtaactatattattcactataccctccaagttttccgacaaagacacttgttagttggttaatttattagctggag |
49125955 |
T |
|
| Q |
203 |
tctttcatgattaaatcagtcataataaataacatccatgtaaattatat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49125954 |
tctttcatgattaaatcagtcataataaataacatccatgtaaattatat |
49125905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 37664463 - 37664387
Alignment:
| Q |
119 |
ggaaacatgtaactatattattcactataccctccaagttttccgacaaagacacttgttagttggttaatttatta |
195 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||| | |||| |||||||| | |||||| |||||||||| |||| |
|
|
| T |
37664463 |
ggaaacatgtaaccatattattcactacacgctctgtgatttctgacaaagatatttgttaattggttaattcatta |
37664387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University