View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7909_low_2 (Length: 850)
Name: NF7909_low_2
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 18 - 667
Target Start/End: Complemental strand, 9050152 - 9049506
Alignment:
| Q |
18 |
gttagaaaatttaatacatgggtcattctgttgacgaaaatttcataccacagtgagtttgacgaaatcacagcaacacggtcattttgttgaaactcca |
117 |
Q |
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| T |
9050152 |
gttagaaaatttaatacatgggtcattttgttgatgaaaatttcatatca--gtgagtttgacgaaatcacagtgacacggtcattttgttgaaactcca |
9050055 |
T |
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| Q |
118 |
aagtgtagtttttgtcaaatcacggttgaacattgtgattctgccaaactcgccactgatccaaaatcattgtggcaattggcagaatcaccatgactcg |
217 |
Q |
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| T |
9050054 |
aagtgtagtttttgtcaaatcacggttgaacattgtgattctgccaaactcgccactgatccaaa-tcattgtggcaattggcagaatcacagtgactcg |
9049956 |
T |
|
| Q |
218 |
tcgtgattttgcaagaaagtaacaccatgatattgtcaaacataaagtgattctaaacatgcaagagttccaacaaaattacactgacaccgtgatttcg |
317 |
Q |
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| T |
9049955 |
tcctgattttgcaagaaagtgacaccatgatattgtcaaacataaagtgattctaaacatgcaagagcttcaacaaaattacagtcacaccgtgatttcg |
9049856 |
T |
|
| Q |
318 |
tcaaactcgcattaattccaaacatgcaattagatctgttatgggaactcaccaaataacctctaaaagaagtttgaatcacaacagcagcataatgctc |
417 |
Q |
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| T |
9049855 |
tcaaactcacattaattccaaacatgcaattagatctgttatgtgaactcaccaaataacctctaaaagaagtttgaatcacaacagctgcataatgctc |
9049756 |
T |
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| Q |
418 |
cctagcatgatttgaactcttagtcaaccttgcaacttccacagcagcttgagcagtagctcttgctgcctcagctgtagctatagccacagcaagagca |
517 |
Q |
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| T |
9049755 |
cctagcatgatttgaactcttagtcaaccttgcaacttccacagcagcttgagcagtagctcttgctgcctcagctgtagccatagccacagcaagagca |
9049656 |
T |
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| Q |
518 |
tgtttctcatcctgatctgtccttgaagccacacttgtagcagtaaccacatcatgcttcaattttgttggtgtactttgttgagtattattcactgttt |
617 |
Q |
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| T |
9049655 |
tgtttctcatcctgatctgtccttgaagccacacttgtagcagtaaccacatcatgcttcaattttgttggtgtactttgttgagtattattcactgttt |
9049556 |
T |
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| Q |
618 |
catgattcactggtttcctaaaaatccaccttcttttttctctcttctac |
667 |
Q |
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| T |
9049555 |
catgattcactggtttcctaaaaatccaccttcttttttctctcttctac |
9049506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 694 - 837
Target Start/End: Complemental strand, 9049480 - 9049337
Alignment:
| Q |
694 |
ttgttttcattctttcaatacttcatttccatgaattagatagtaaaaacaaaagggtcattaaaactacaaagacaaatgaaaaatttacagaattttt |
793 |
Q |
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| T |
9049480 |
ttgttttcattctttcaatgcttcatttccatgaattacaaagtagaaacaaaagggtcactaaaactataaacaaaaatgaaaaattaacagaattttt |
9049381 |
T |
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| Q |
794 |
tgaagtaccttttcttcatcttcttcttgatcacaatcttctct |
837 |
Q |
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| T |
9049380 |
ttaagtaccttttcttcatcttcttcttgatcacaatcttctct |
9049337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 45106677 - 45106715
Alignment:
| Q |
98 |
gtcattttgttgaaactccaaagtgtagtttttgtcaaa |
136 |
Q |
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| T |
45106677 |
gtcattttgctgaaactccaaagtgtagattttgtcaaa |
45106715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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