View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7909_low_23 (Length: 262)
Name: NF7909_low_23
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 14195483 - 14195250
Alignment:
| Q |
13 |
aatattttttagtctatcaaaaagannnnnnnnaccatctggtcctatatctcttccacttataatattaatctttgcaaagggaaatcaaatcaacaca |
112 |
Q |
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| T |
14195483 |
aatattttttagtctatcaaaaagattttttttaccatctggtcctatatctcttccacttataatattaatctttggaaagggaaatcaaatcaacaca |
14195384 |
T |
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| Q |
113 |
attttcccactttcttgtattggtccagcaattcttctattggttctaatttctgcattatcctttgataatgaagctgattataaggatattcaataca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14195383 |
attttcccactttcttgtattggtccagcaattcttctattggttctaatttctgcattatcctttgataatgaagctgattataaggatattcagtaca |
14195284 |
T |
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| Q |
213 |
cattttttgcagcatcaacagtttctggaatttt |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
14195283 |
cattttttgcagcatcaacagtttctggaatttt |
14195250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 14182320 - 14182091
Alignment:
| Q |
17 |
ttttttagtctatcaaaaagannnnnnnnaccatctggtcctatatctcttccacttataatattaatctttgcaaagggaaatcaaatcaacacaattt |
116 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14182320 |
ttttttagtctaacaaaaagattttttttaccatctggtcctatatctcttccacttataatattaatctttgcaaaggggaatcaaatcaacacaattt |
14182221 |
T |
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| Q |
117 |
tcccactttcttgtattggtccagcaattcttctattggttctaatttctgcattatcctttgataatgaagctgattataaggatattcaatacacatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14182220 |
tcccactttcttgtattggtccagcaattcttctattggttctaatttctgcattatcctttgataatgaagctgattataaggacattcaatacacatt |
14182121 |
T |
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| Q |
217 |
ttttgcagcatcaacagtttctggaatttt |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14182120 |
ttttgcagcatcaacagtttctggaatttt |
14182091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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