View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7909_low_26 (Length: 225)
Name: NF7909_low_26
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_low_26 |
 | |
|
| [»] scaffold0557 (2 HSPs) |
| | |
|
| [»] scaffold0442 (2 HSPs) |
| | |
|
| [»] scaffold0115 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 21005948 - 21006139
Alignment:
| Q |
14 |
gagatgaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
113 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21005948 |
gagaagaacaacatgagtactatgattccaaatcacaatgtcaatcaaaacatgcagcgtcaaatctatcctgaaagtgttcaacaaaacaagaacacca |
21006047 |
T |
|
| Q |
114 |
tcatgagtactatggttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006048 |
tcatgagtactatggttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaac |
21006139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 20903237 - 20903423
Alignment:
| Q |
19 |
gaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatg |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| ||| ||| |||||| | ||||||||| | | |||||||||||| |||||||||||||||||| |
|
|
| T |
20903237 |
gaacaacatgagtactatgattccaaatcagggtgttaatcaaagcatgcaacatcaaatctacaccggaagtgttcaacagaacaagaacaccatcatg |
20903336 |
T |
|
| Q |
119 |
agtactatggttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaac |
205 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
20903337 |
agtactatggttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaac |
20903423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 20921838 - 20922015
Alignment:
| Q |
14 |
gagatgaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
113 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| | ||||| ||| |||||| ||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
20921838 |
gagaagaacaacatgagtactatgattccaaatcacggtatcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacacca |
20921937 |
T |
|
| Q |
114 |
tcatgagtactatggttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacaga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| ||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
20921938 |
tcatgagtactatggttccaactcctagtgt------aaacttgcatcctcaggtctacacttcaagtgttcatcaacaacaga |
20922015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 21005850 - 21005900
Alignment:
| Q |
60 |
aaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaaca |
110 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
21005850 |
aaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca |
21005900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 41336390 - 41336581
Alignment:
| Q |
14 |
gagatgaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
113 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||||||| ||| |||||| ||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
41336390 |
gagaagaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacacca |
41336489 |
T |
|
| Q |
114 |
tcatgagtactatggttccaactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaac |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
41336490 |
tcatgagtactatggttccaactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaac |
41336581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 5981 - 5847
Alignment:
| Q |
14 |
gagatgaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
113 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| || ||| ||| ||| |||||| ||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
5981 |
gagaagaacaacatgagtactatgattccaaattacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaacacca |
5882 |
T |
|
| Q |
114 |
tcatgagtactatggttccaactcctagtgttaat |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5881 |
tcatgagtactatggttccaactcctagtgttaat |
5847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 5070 - 5268
Alignment:
| Q |
13 |
tgagatgaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacc |
112 |
Q |
| |
|
||||| |||||||| || ||||||||||| |||||||| ||| ||| ||| |||| ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
5070 |
tgagaagaacaacatgaatactatgattctaaatcacagtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaacacc |
5169 |
T |
|
| Q |
113 |
atcatgagtactatggttccaactcctagtgttaattctaacatgca------acctcaagtttacacttcaagtgttcatcaagaacagaggagcaac |
205 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
5170 |
atcgtgagtactatggttccaactccaagtgttaatgaaaacatgcacgtgctgtctcaagtctacacttcaagtgttaatcaacaacagaagagcaac |
5268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 9370 - 9178
Alignment:
| Q |
19 |
gaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatg |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||| ||| ||| |||||| | ||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9370 |
gaacaacatgagtactatgattccaaattacggtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaacaccatcatg |
9271 |
T |
|
| Q |
119 |
agtactatggttccaactcctagtgttaattcta------acatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
9270 |
agtactatggttccaactcctagtgttaatcaaaacatgcacatgcagtttcaagtctacacttcaagtgttaatcaagaacagaagagcaac |
9178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 8435 - 8566
Alignment:
| Q |
13 |
tgagatgaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacc |
112 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||||||| ||| ||| ||| |||||| ||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
8435 |
tgagaagaacaacatgaatactatgattctaaatcacggtgttaattaaagcatgcaacgtcaaatcaaccctagaagtgttcaacaaaacaagaacacc |
8534 |
T |
|
| Q |
113 |
atcatgagtactatggttccaactcctagtgt |
144 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| |
|
|
| T |
8535 |
attgtgagtactatggttcaaactcctagtgt |
8566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 46924 - 47058
Alignment:
| Q |
14 |
gagatgaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
113 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||||||| ||| ||| ||| |||||| ||||||||||| ||| ||||||||||||| ||||||||| || |
|
|
| T |
46924 |
gagaagaacaacatgagtaccatgattccaaatcacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaacatca |
47023 |
T |
|
| Q |
114 |
tcatgagtactatggttccaactcctagtgttaat |
148 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
47024 |
tcgtgagtactatggttccaactcctagtgttaat |
47058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 48039 - 47962
Alignment:
| Q |
71 |
cgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagtactatggttccaactcctagtgttaat |
148 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
48039 |
cgtcaaatctagcttgtaagtgttcaacaaaacaagaacaccatcgtgagtattatggttccaactcctagtgttaat |
47962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University