View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7909_low_3 (Length: 553)
Name: NF7909_low_3
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 15 - 483
Target Start/End: Original strand, 43729151 - 43729619
Alignment:
| Q |
15 |
tggtggtcaggttgagaaagtattcaagattagtgaagaaaatggatcaaaggaggaagagttaaccaaggattaatgaggttaattcagatagagatgt |
114 |
Q |
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| T |
43729151 |
tggtggtcaggctgagaaagtattcaagattagtgaagaaaatggatcaaaggaggaagagttaaccaaggattaatgaggttaattcagatagagatgt |
43729250 |
T |
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| Q |
115 |
tgaagtggcaaaaatgtatggttagtatatatgttgaactctagtcagcttgttagattatagagcaaaagtcctgaataggaaatgatcatgattcaca |
214 |
Q |
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| T |
43729251 |
tgaagtggcaaaaatgtatggttagtatatatgttgaactctagtcagcttgttagattatagagcaaaagtcctgaataggaaatgatcatgattcaca |
43729350 |
T |
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| Q |
215 |
ctcaaattggatagtcatatattcctttatcctgtttgttttgattagtattagtcacagatatgggtaggcaatatatatttaaaatttgcttatgtat |
314 |
Q |
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| T |
43729351 |
ctcaaattggatagtcatatattcctttatcctgtttgttttgataagtattagtcacagatatgggtaggcaatatatatttaaaatttgcttatgtat |
43729450 |
T |
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| Q |
315 |
accctttttgatagagaaatattatttaaacaaccaaaacttgccaacttatttgacaatcgaatgaaaatgcatcatttacaattctaactattgattt |
414 |
Q |
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| T |
43729451 |
accctttttgatagagaaatattatttaaacaaccaaaacttgccaacttatttgacaatcgaatgaaaatgcatcatttacaattctaactattgattt |
43729550 |
T |
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| Q |
415 |
gacttgaagagagaaaaaacaataaaaagacgaaatcttatttatatgttgttgaccaatttgtccaaa |
483 |
Q |
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| T |
43729551 |
gacttgaagagagaaaaaacaataaaaagatgaaatcgtatttatatgttgttgaccaacttgtccaaa |
43729619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 43687610 - 43687669
Alignment:
| Q |
19 |
ggtcaggttgagaaagtattcaagattagtgaagaaaatggatcaaaggaggaagagtta |
78 |
Q |
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| T |
43687610 |
ggtcaggttgagaaagtatccaaagtgagtgaagaaaatggttccaaggaggaatagtta |
43687669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 537
Target Start/End: Original strand, 43729618 - 43729652
Alignment:
| Q |
503 |
aacaagacattaaagtaggcttgtcatcttctatc |
537 |
Q |
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| T |
43729618 |
aacaagacactaaagtaggcttgtcatcttctatc |
43729652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 442
Target Start/End: Original strand, 4666780 - 4666892
Alignment:
| Q |
327 |
agagaaatattatttaaacaaccaaaacttgccaacttatttgacaatcgaatgaaaatgcatcatttacaattctaactattgatttgacttga--aga |
424 |
Q |
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| T |
4666780 |
agagaaatgttatttgaacaaccaaaacttgacaacgtatttgacaaccatataaaaatacaccattta------taactattgatttgacttgaggaaa |
4666873 |
T |
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| Q |
425 |
gagaaaaaac-aataaaaa |
442 |
Q |
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| T |
4666874 |
gagaaaaaactaataaaaa |
4666892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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