View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7909_low_5 (Length: 488)
Name: NF7909_low_5
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 128 - 473
Target Start/End: Original strand, 54615640 - 54615991
Alignment:
| Q |
128 |
taattttttgcttgttgtttaggttgttgttggtgaa------attgagaataaagacaagaggatcaaagtaggttctgaggacggagaatccaagatc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
54615640 |
taattttttgcttgttgtttaggttgttgttggtgaaattgaaattgagaataaagacaagaggatcaaaataggttctgaggacggagaatcaaagatc |
54615739 |
T |
|
| Q |
222 |
accgggaatccgaataccaagaaaaactgtgtagctgaagatacttcaaactcaaaggaaaattcaaaagtttctgatgctcaaaagactgattacattc |
321 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54615740 |
accgggaatccgaataccaagaagaactgtgtagcagaagatacttcaaactcaaaggaaaattcaaaagtttctgatgttcaaaagactgattacattc |
54615839 |
T |
|
| Q |
322 |
atgttcgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagtaataataatagtttagtttggtttctggctgagaaaaataa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54615840 |
atgttcgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagtagtaataatagtttagtttggtttctggctgagaaaaataa |
54615939 |
T |
|
| Q |
422 |
aatcaagttttagtcttatatctgaataatcatgtatgatgcaggttagaag |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54615940 |
aatcaagttttagtcttatatctgaataattatgtatgatgcaggttagaag |
54615991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54615513 - 54615574
Alignment:
| Q |
1 |
tcaaggtgtgtacaattttgcatagagaggtcataattcataagaatatcattgatcttcaa |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54615513 |
tcaaggtgtgtacaattttgcatagagaggtcataattcataagaatatcattgatcttcaa |
54615574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 26483996 - 26484067
Alignment:
| Q |
310 |
ctgattacattcatgttcgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagta |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
26483996 |
ctgattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagta |
26484067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University