View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7909_low_6 (Length: 472)
Name: NF7909_low_6
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 37358507 - 37358101
Alignment:
| Q |
19 |
atactatatgataatatttttgatccaaatcttacctgaatgctaaaacttcaacaaactcagtttctatctgaaaagatgaataaaagcaaaatggcct |
118 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37358507 |
atactatatgataatatttttggttcaaatcttacctgaatgctaaaacttcaacaaactcagtttctatctgaaaagatgaataaaagcaatatggcct |
37358408 |
T |
|
| Q |
119 |
tagaaaaggtttgaatttcaaatattaaatatggttaaactacatttcatttaaatatgttttttctgtacnnnnnnnn-tgtttttgcttactcctgtc |
217 |
Q |
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| T |
37358407 |
tagaaaaggtttgaatttcaaatattaaatgt--ttaaactacatttcatttaaatatgttttttctgtacaaaaaaaaatgtttttgcttactcctgtc |
37358310 |
T |
|
| Q |
218 |
tcttctttgacttctctgattgcagcagcacaaacatcctcaccctgcaaattgaattcaaatgaagttaaaaactaatctttcaaaagtttaacaatca |
317 |
Q |
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| T |
37358309 |
tcttctttgacttctctgattgcagcagcacaaacatcctcaccctgcaaattgaattcaaatgaagttaaaaactaatctttcaaaagtttaacaatca |
37358210 |
T |
|
| Q |
318 |
atgataaatttttaacatatatacctcattaacagctccagtaggcaatttccatattcctttaccactgaatctaccgnnnnnnncctgaaccacaagg |
417 |
Q |
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| T |
37358209 |
atgataaatttttaacatatatacctcattaacagctccagtaggcaatttccatattcctttaccactgaatctaccgtttttttcctgaaccacaagg |
37358110 |
T |
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| Q |
418 |
acctatatg |
426 |
Q |
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| T |
37358109 |
acctatatg |
37358101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 38392548 - 38392469
Alignment:
| Q |
202 |
tttgcttactcctgtctcttctttgacttctctgattgcagcagcacaaacatcctcaccctgcaaattgaattcaaatg |
281 |
Q |
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||||||||| ||||||||||| || |||||||| ||||||||| |||| ||||||||||||||||| ||||| ||||| |
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| T |
38392548 |
tttgcttacccctgtctcttccttaacttctctaattgcagcattgcaaatatcctcaccctgcaaatagaattaaaatg |
38392469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 38393142 - 38393114
Alignment:
| Q |
50 |
ttacctgaatgctaaaacttcaacaaact |
78 |
Q |
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| T |
38393142 |
ttacctgaatgctaaaacttcaacaaact |
38393114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 973648 - 973703
Alignment:
| Q |
337 |
tatacctcattaacagctccagtaggcaatttccatattcctttaccactgaatct |
392 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||| | ||||||||| |
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| T |
973648 |
tatacctcattaacagctctagtaggtgatttccatattcctttgcgactgaatct |
973703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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