View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7909_low_9 (Length: 385)
Name: NF7909_low_9
Description: NF7909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7909_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 7484588 - 7484233
Alignment:
| Q |
12 |
tgagaagaagaatgaagagaagatctcggatgtgaagtatttttcatgctcctattgcaaggggcaatattctactttacaagggttaagagggcatcaa |
111 |
Q |
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| T |
7484588 |
tgagaagaagaacgaagagaagatctcggatgtgaagtatttttcatgctcctattgcaaggggcaatattctactttacaagggttaagagggcatcaa |
7484489 |
T |
|
| Q |
112 |
aatgcccataaaacagaacgtgcaatggaaaaacaacgtaaagaaaggtataatgttggtgctttaggtttagggcaatctcactttaaaccttatatca |
211 |
Q |
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| T |
7484488 |
aatgcccataaagcagaacgtgcaatggaaaaacaacgtaaagaaatgtataatgttggtgctttaggtttagggcaatctcaccttaaaccttatatca |
7484389 |
T |
|
| Q |
212 |
ttgattctagtgcttcttttataccttataataattataggggccttggtgttagaatggagtcaacaattcaaaaaccaccttatactaaccctaggat |
311 |
Q |
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| T |
7484388 |
ttgattctagtgcttcttttataccttataataattataggggccttggtgttagaatggagtcaacaattcaaaaaccaccttatactaaccctaggat |
7484289 |
T |
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| Q |
312 |
taccccaaatggttctaaatatggttatggtgctttgcgtttgaatgatgtattac |
367 |
Q |
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| T |
7484288 |
taccccaaatggttctaaatatggttatggtgctttgcgtttgaatgatgtattac |
7484233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 45 - 357
Target Start/End: Complemental strand, 7491309 - 7490997
Alignment:
| Q |
45 |
gaagtatttttcatgctcctattgcaaggggcaatattctactttacaagggttaagagggcatcaaaatgcccataaaacagaacgtgcaatggaaaaa |
144 |
Q |
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| T |
7491309 |
gaagtattttacatgctcgtattgcaaggggcaattttctactttccaaggcttaggagggcatcaaaatgcccataaggcggaacgtgcgttggaaaaa |
7491210 |
T |
|
| Q |
145 |
caacgtaaagaaaggtataatgttggtgctttaggtttagggcaatctcactttaaaccttatatcattgattctagtgcttcttttataccttataata |
244 |
Q |
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| T |
7491209 |
caacgtaaagaaaggtatgatgctggtgctttaggtttagggcaatctcactttaaaccttatttcaattattctagtactctttttacaccttataata |
7491110 |
T |
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| Q |
245 |
attataggggccttggtgttagaatggagtcaacaattcaaaaaccaccttatactaaccctaggattaccccaaatggttctaaatatggttatggtgc |
344 |
Q |
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| T |
7491109 |
attataggggccttggtgttagaatggagacaacaattcaaaaaccaacttatactaaccctaggtttatcccaaatggttctggatatggttatggtag |
7491010 |
T |
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| Q |
345 |
tttgcgtttgaat |
357 |
Q |
| |
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||||||||||||| |
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| T |
7491009 |
tttgcgtttgaat |
7490997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 45 - 357
Target Start/End: Complemental strand, 7499030 - 7498718
Alignment:
| Q |
45 |
gaagtatttttcatgctcctattgcaaggggcaatattctactttacaagggttaagagggcatcaaaatgcccataaaacagaacgtgcaatggaaaaa |
144 |
Q |
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|||||||||| ||||||| |||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
7499030 |
gaagtattttacatgctcgtattgcaaggggcaattttctactttccaaggcttaggagggcatcaaaatgcccataaggcagaacgtgcattggaaaaa |
7498931 |
T |
|
| Q |
145 |
caacgtaaagaaaggtataatgttggtgctttaggtttagggcaatctcactttaaaccttatatcattgattctagtgcttcttttataccttataata |
244 |
Q |
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|||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | | | |||||||| || ||||| ||||||||||| |
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| T |
7498930 |
caactaaaagaaaggtatgatgctggtgctttaggtttagggcaatctcactttaaaccttatttaaattattctagtactctttttacaccttataata |
7498831 |
T |
|
| Q |
245 |
attataggggccttggtgttagaatggagtcaacaattcaaaaaccaccttatactaaccctaggattaccccaaatggttctaaatatggttatggtgc |
344 |
Q |
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| T |
7498830 |
attataggggccttggtgttagaatggagacaacaattcaaaaaccaacttatactaaccctaggtttatcccaactggttctggatatggttatggtaa |
7498731 |
T |
|
| Q |
345 |
tttgcgtttgaat |
357 |
Q |
| |
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||||||||||||| |
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| T |
7498730 |
tttgcgtttgaat |
7498718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 23852148 - 23852296
Alignment:
| Q |
52 |
ttttcatgctcctattgcaaggggcaatattctactttacaagggttaagagggcatcaaaatgcccataaaacagaacgtgcaatggaaaaacaacgta |
151 |
Q |
| |
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||||||||||||| ||| ||| |||||| |||||||| |||| ||| |||| || || || || ||||| | |||||| | | ||||| ||||| | |
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| T |
23852148 |
ttttcatgctccttttgtaagaggcaattttctacttctcaagcgttgggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacgga |
23852247 |
T |
|
| Q |
152 |
aagaaaggtataatgttggtgctttaggtttagggcaatctcactttaa |
200 |
Q |
| |
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|| |||||||| ||| ||||| ||||||||||||||||||| ||||||| |
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| T |
23852248 |
aacaaaggtatgatgatggtgttttaggtttagggcaatcttactttaa |
23852296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 2022901 - 2022969
Alignment:
| Q |
139 |
gaaaaacaacgtaaagaaaggtataatgttggtgctttaggtttagggcaatctcactttaaaccttat |
207 |
Q |
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| T |
2022901 |
gaaaaacaacgtaaacaaaggtatgaaagtggtgcttttggtttagggcaacctcactttaacccttat |
2022969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 3167291 - 3167417
Alignment:
| Q |
81 |
ttctactttacaagggttaagagggcatcaaaatgcccataaaacagaacgtgcaatggaaaaacaacgtaaagaaaggtataatgttggtgctttaggt |
180 |
Q |
| |
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|||||| | ||||| |||| |||| ||||| ||||||||||| | |||||||| | ||||||||||||||| ||| |||| | ||||| ||| ||| |
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| T |
3167291 |
ttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaagtatgaaaatggtgtttttggt |
3167390 |
T |
|
| Q |
181 |
ttagggcaatctcactttaaaccttat |
207 |
Q |
| |
|
||||||||| || ||||||| |||||| |
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| T |
3167391 |
ttagggcaaccttactttaacccttat |
3167417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 1739238 - 1739304
Alignment:
| Q |
259 |
ggtgttagaatggagtcaacaattcaaaaaccaccttatactaaccctaggattaccccaaatggtt |
325 |
Q |
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|||||||||||||| || | |||||||||||| |||||| ||||||||||||| ||||| |||||| |
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| T |
1739238 |
ggtgttagaatggaatctatgattcaaaaaccatcttatattaaccctaggattgccccacatggtt |
1739304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 1744581 - 1744647
Alignment:
| Q |
259 |
ggtgttagaatggagtcaacaattcaaaaaccaccttatactaaccctaggattaccccaaatggtt |
325 |
Q |
| |
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|||||||||||||| || | |||||||||||| |||||| |||||| ||||||||||| |||||| |
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| T |
1744581 |
ggtgttagaatggaatctatgattcaaaaaccatcttatattaaccccgggattaccccacatggtt |
1744647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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