View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7910_high_1 (Length: 419)
Name: NF7910_high_1
Description: NF7910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7910_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 24 - 399
Target Start/End: Original strand, 41241473 - 41241848
Alignment:
| Q |
24 |
agttatgcctccttgacgtctgaaggtttgagtttatgcagataggcagcagggctgccacattaccttggcctctaaacatg----tttgtttttgggt |
119 |
Q |
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| T |
41241473 |
agttatgcctccttgacgtctgaaggtttgagtttatgcagataggcagcagggctgccacattaccttggcctctaaacatgcatgtttgtttttgggt |
41241572 |
T |
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| Q |
120 |
ccttcccattatgtttaggttaatttgtttatttttgttgttgactgtgtattcgtcaaggttgtactccgggggacttaataggtaggtacctgattca |
219 |
Q |
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| T |
41241573 |
ccttcccattatgtttaggtt----tgcttatttttgttgttgactgtgtattcgtcaaggttgtactccgggggactgaataggtacgtacctgattca |
41241668 |
T |
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| Q |
220 |
tgctcatgatacttggatctatgttgttcccagttcaagtttcaagggttcatattccacataggtgtcgccttaatatctatattggtcattgtgattg |
319 |
Q |
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| T |
41241669 |
tgctcatgatacttggatctatgttgttcccagttcaagtttcaagggttcatattctacataggtgtcgccttaatatctatattggtcattgtgattg |
41241768 |
T |
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| Q |
320 |
atcaggctcgtttgatatcctcatcatcatcttctcaattcttatgacccttcccatgtaataattactatcaagtgtga |
399 |
Q |
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| T |
41241769 |
atcaggcttgtttgatatcctcctcatcatcttctcaattcttatgacccttcccatgtaataattactatcaagtgtga |
41241848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 41246072 - 41246003
Alignment:
| Q |
255 |
caagtttcaagggttcatattccacataggtgtcgccttaatatctatattggtcattgtgattgatcag |
324 |
Q |
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| T |
41246072 |
caagtttcaagggttcaggtttcacatcggcgtcgccttaatacctctattggtcattgtgattgctcag |
41246003 |
T |
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