View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7910_low_2 (Length: 242)
Name: NF7910_low_2
Description: NF7910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7910_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 91662 - 91894
Alignment:
| Q |
1 |
tcagcaacaataaagcctccttggatgactattgctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggct |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
91662 |
tcagcaacaatagagcctccttggatgactattgctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggct |
91761 |
T |
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| Q |
101 |
tttggaccacgaatttgcagttttggaataccgattctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcat |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
91762 |
ttcggaccacgaatttgcagttttggaataccgattctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcat |
91861 |
T |
|
| Q |
201 |
ggcgtgtacataaagtgtgtcttgatgtccatc |
233 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
91862 |
ggcgtgtacataaagtgtgtcttgatatccatc |
91894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 94969 - 95201
Alignment:
| Q |
1 |
tcagcaacaataaagcctccttggatgactattgctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggct |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
94969 |
tcagcaacaatagagcctccttggatgactattgctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggct |
95068 |
T |
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| Q |
101 |
tttggaccacgaatttgcagttttggaataccgattctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcat |
200 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95069 |
ttcggaccacgaatttgcagttttgaaataccgattctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcat |
95168 |
T |
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| Q |
201 |
ggcgtgtacataaagtgtgtcttgatgtccatc |
233 |
Q |
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| T |
95169 |
ggcgtgtacataaagtgtgtcttgatatccatc |
95201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 37154570 - 37154802
Alignment:
| Q |
1 |
tcagcaacaataaagcctccttggatgactattgctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggct |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154570 |
tcagcaacaatagagcctccttggatgactattgctgatggtccagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggct |
37154669 |
T |
|
| Q |
101 |
tttggaccacgaatttgcagttttggaataccgattctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcat |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37154670 |
ttcggaccacgaatttgcagttttggaataccgattctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcacggtaaaattgacgcat |
37154769 |
T |
|
| Q |
201 |
ggcgtgtacataaagtgtgtcttgatgtccatc |
233 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |
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| T |
37154770 |
ggcgtgtacataaagtgtgtcttgatatccatc |
37154802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 37150804 - 37150575
Alignment:
| Q |
4 |
gcaacaataaagcctccttggatgactattgctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggctttt |
103 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37150804 |
gcaacaatagagcctccttcgatgactattgctgatggtgccgttctttcttttcttccttgtgcggtcacaatgcattgttggtctgacataggctttc |
37150705 |
T |
|
| Q |
104 |
ggaccacgaatttgcagttttggaataccgattctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggc |
203 |
Q |
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||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||| |
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| T |
37150704 |
ggaccacaaatttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattgacgcatggc |
37150605 |
T |
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| Q |
204 |
gtgtacataaagtgtgtcttgatgtccatc |
233 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
37150604 |
gtgtacataaagtgtgtcttgatatccatc |
37150575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 37159629 - 37159400
Alignment:
| Q |
4 |
gcaacaataaagcctccttggatgactattgctgatggtgcagttatttcttttcttccttgtgcggtcacaatgcattgttggtttgacataggctttt |
103 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37159629 |
gcaacaatagagcctccttcgatgactattgctgatggtgccgttctttcttttcttccttgtgcggtcacaatgcattgttggtctgacataggctttc |
37159530 |
T |
|
| Q |
104 |
ggaccacgaatttgcagttttggaataccgattctgcattaccaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggc |
203 |
Q |
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||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||| |
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| T |
37159529 |
ggaccacaaatttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattgacgcatggc |
37159430 |
T |
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| Q |
204 |
gtgtacataaagtgtgtcttgatgtccatc |
233 |
Q |
| |
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||||||||||||||||||||||| |||||| |
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| T |
37159429 |
gtgtacataaagtgtgtcttgatatccatc |
37159400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 37162365 - 37162539
Alignment:
| Q |
52 |
tcttttcttccttgtgcggtcacaatgcattgttggtttgacataggcttttggaccacgaatttgcagttttggaataccgattctgcattaccaaaga |
151 |
Q |
| |
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|||||||| |||||||| || |||||||||||||||||| | || |||| || | |||| ||||||||||||| || ||| ||||| ||||||| |
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| T |
37162365 |
tcttttctaccttgtgcagttacaatgcattgttggttttctaatggttttttaactaagaatgtgcagttttggaaaacagatattgcatcgccaaaga |
37162464 |
T |
|
| Q |
152 |
caaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgat |
226 |
Q |
| |
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||||| ||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||| |
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| T |
37162465 |
tgaagtcaatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgat |
37162539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 46315853 - 46315773
Alignment:
| Q |
144 |
accaaagacaaagtcgatggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttg |
224 |
Q |
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||||||||| ||||| ||||||||||| ||| |||| || ||||| ||||||||||||| ||| | |||||||||||||| |
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| T |
46315853 |
accaaagacgaagtcaatggtacctgagataatacaatcacggtagaattgacgcatggtgtgagcgtaaagtgtgtcttg |
46315773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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