View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7910_low_3 (Length: 323)
Name: NF7910_low_3
Description: NF7910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7910_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 43030412 - 43030717
Alignment:
| Q |
18 |
aaatacctcaaagctttggtaactcacctgcatcagtgatcaatttagctaacaacatgttgagtggaaacattcccacaagctttggtttcatgagtcc |
117 |
Q |
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| T |
43030412 |
aaatacctcaaagctttggtaactcacctgcatcagtgatcaatttagctaacaacatgttgagtggaaacattcccacaagctttggtttcatgagtcc |
43030511 |
T |
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| Q |
118 |
taaactaaaagagattctttttcttaataaccagttaacaggttgtatacctcaaggtgttggtatattcacagaagtgcaagttcttgatgtgagtttc |
217 |
Q |
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| T |
43030512 |
taaactaaaagagattctttttcttaataaccagttaacaggttgtatacctcaaggtgttggtatattcacagaagtgcaagttcttgatgtgagtttc |
43030611 |
T |
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| Q |
218 |
aattcacttgtaggtcatttgccagatacaatatcatgtttgcaagatattgaagttcttaatttggcacataacaatctttctggtgatatatctgatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030612 |
aattcacttgtaggtcatttgccagatacaatatcatgtttgcaagatattgaagttcttaatttggcacataacaatctttctggtgatatatctgatg |
43030711 |
T |
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| Q |
318 |
tgatat |
323 |
Q |
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|||||| |
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| T |
43030712 |
tgatat |
43030717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 34201317 - 34201044
Alignment:
| Q |
18 |
aaatacctcaaagctttggtaactcacctgcatcagtgatcaatttagctaacaacatgttgagtggaaacattcccacaagctttggtttcatgagtcc |
117 |
Q |
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|||||||| || ||| ||||| |||||||| || ||||| || |||||||| |||| ||||||||||| ||||| | || |||||||||||| | | |
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| T |
34201317 |
aaatacctacaaacttaggtaattcacctgcttctgtgataaacttagctaataacaaattgagtggaaatattccagctagttttggtttcatgggatc |
34201218 |
T |
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| Q |
118 |
taaactaaaagagattctttttcttaataaccagttaacaggttgtatacctcaaggtgttggtatattcacagaagtgcaagttcttgatgtgagtttc |
217 |
Q |
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| T |
34201217 |
aaagatcaaagagattttgtttctgaataatcagttaactggttgtatacctgaaggagttggactttttactgagatggaagttcttgatgtgagtttc |
34201118 |
T |
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| Q |
218 |
aattcacttgtaggtcatttgccagatacaatatcatgtttgcaagatattgaagttcttaatttggcacataa |
291 |
Q |
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|||||| | | |||||||| || |||||| |||||||||| || |||| ||||| ||||| ||||| ||||| |
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| T |
34201117 |
aattcattgatgggtcatttacctgatacattatcatgtttacagaatatagaagtgcttaacttggctcataa |
34201044 |
T |
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