View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7910_low_6 (Length: 252)
Name: NF7910_low_6
Description: NF7910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7910_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 1878163 - 1877920
Alignment:
| Q |
1 |
aacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1878163 |
aacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacgtcactgaattcattgctt |
1878064 |
T |
|
| Q |
101 |
gcaatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1878063 |
gcaatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaacc |
1877964 |
T |
|
| Q |
201 |
ttgttgaaattcagaatatatggtatatgttcttaatgatgatg |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1877963 |
ttgttgaaattcagaatatatggtatatgttcttaatgatgatg |
1877920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 1884175 - 1883959
Alignment:
| Q |
1 |
aacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| | ||| | | |||||||| ||| ||||||||| | |
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| T |
1884175 |
aacagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcct |
1884076 |
T |
|
| Q |
101 |
gcaatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaacc |
200 |
Q |
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|||||| ||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||| | || |||||||| |||||| |
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| T |
1884075 |
ataatcacaacaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatctttctatgtgttctaagttttatcctatatacaacaatcacaaacc |
1883976 |
T |
|
| Q |
201 |
ttgttgaaattcagaat |
217 |
Q |
| |
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|||||||| |||||||| |
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| T |
1883975 |
ttgttgaagttcagaat |
1883959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 1911125 - 1910967
Alignment:
| Q |
1 |
aacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgctt |
100 |
Q |
| |
|
||||||||||||||| |||| ||| |||| |||||||||||||||||||| ||||||||| | ||| ||| |||||||| ||| | |||||| || | |
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| T |
1911125 |
aacagcataagcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcat |
1911026 |
T |
|
| Q |
101 |
gcaatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
159 |
Q |
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|||||| || ||| |||| ||||||||| |||||||||||||||||||| ||||| |
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|
| T |
1911025 |
ataatcacagcaggtggcagaacatccatgtacaaggaccatcttcttgtcatgtttct |
1910967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 1890816 - 1890740
Alignment:
| Q |
4 |
agcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagcca |
80 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| |||||||| |
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|
| T |
1890816 |
agcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagcca |
1890740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 1902080 - 1901922
Alignment:
| Q |
1 |
aacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgctt |
100 |
Q |
| |
|
||||||||||||||| |||| ||| |||| ||||||||||||||||||||| | |||||| | ||| ||| |||||||| ||| ||||||||| | |
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| T |
1902080 |
aacagcataagcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcct |
1901981 |
T |
|
| Q |
101 |
gcaatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
159 |
Q |
| |
|
|||||||||| ||| | || ||||||||||| ||||||||||||||||| ||||| |
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|
| T |
1901980 |
ataatcaccacaggtggcaaaacatccatgtaaagtgaccatcttcttgtcatgtttct |
1901922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 1895669 - 1895509
Alignment:
| Q |
1 |
aacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgctt |
100 |
Q |
| |
|
||||||||||| ||| |||||||| |||| |||||||||||||||| ||||||||||||| | ||| ||| |||||||| ||| | ||| | | | |
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| T |
1895669 |
aacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcct |
1895570 |
T |
|
| Q |
101 |
gcaatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctat |
161 |
Q |
| |
|
||||| | |||||| | || |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
1895569 |
atgatcactaaaattggcaaaacatccatgtaaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 11549179 - 11549123
Alignment:
| Q |
103 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
159 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
11549179 |
aatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 11537506 - 11537453
Alignment:
| Q |
103 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctt |
156 |
Q |
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|||||| |||| |||||||||||| |||||||| || ||||||||| ||||||| |
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| T |
11537506 |
aatcactacaactggtagaaaatctatgtaaaaagatcatcttcttttcatctt |
11537453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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