View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7911_low_15 (Length: 224)
Name: NF7911_low_15
Description: NF7911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7911_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 4091983 - 4092161
Alignment:
| Q |
18 |
atcatgactaggctgaagttcatcctcatcaaaaagggtttgaagattttgcatatcatgacatgtattcaacttgatcttgattccaacaataacagct |
117 |
Q |
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| T |
4091983 |
atcatgactaggctgaagttcatcctcatcaaaaagggtttgaagattttgcatatcatgacatgtattcaacttgatcttgattccaacaataacagct |
4092082 |
T |
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| Q |
118 |
tcnnnnnnnatccttctcaaccagagaactaaaagaaaaagaggaagaaagataaataaagtgataaattgtatatatg |
196 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4092083 |
tctttttttatccttctcaaccagagaactaaaagaaaaagaggaagaaagataaataaagtgataaattgtatgtatg |
4092161 |
T |
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