View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7911_low_2 (Length: 656)
Name: NF7911_low_2
Description: NF7911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7911_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 2782078 - 2782520
Alignment:
| Q |
18 |
cttccctcacttggtcaactttatccacgtaggagtgagaaaacaaatccattgattnnnnnnnnnnnncaggtggcttcaatagtagcaagttgcccca |
117 |
Q |
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| T |
2782078 |
cttccctcacttggtcaactttatccacgtaggagtgagaaaacaaatccattgattaaaaaagaaaaacaggtggtttcaatagtagcaagttgcccca |
2782177 |
T |
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| Q |
118 |
ctatatttcatttctttttactttggcctcaaaatttggctatataaataattgcgagcctttgtgtaagacaatataaaacataacattttcaaggttg |
217 |
Q |
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| T |
2782178 |
ctatatttcatttctttttattttggcctcaaaatttggttatataaataattgcgagcctttgtgtaagacaatataaaacataacattttcaaggttg |
2782277 |
T |
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| Q |
218 |
atgagatgaagaagaaatgtgagttgtgcaaaagtccagcaaagttgttctgtgaatcagatcaggcaagcctttgttgggaatgtgatgctaaggttca |
317 |
Q |
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| T |
2782278 |
atgagatgaagaagaaatgtgagttgtgcaaaagtccagcaaagttgttctgtgaatcagatcaagcaagcctttgttgggaatgtgatgctaaggttca |
2782377 |
T |
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| Q |
318 |
cactgcaaacttcatagtcacaaagcatcacaggtttcttctctgccatatttgtcaatctttaacaccttggcatggcactggacccaagtttgtaccc |
417 |
Q |
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| T |
2782378 |
cactgcaaacttcatagtcacaaagcatcacaggtttcttctctgccatatttgtcaatctttaacaccttggcatggcactggacccaagtttgtaccc |
2782477 |
T |
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| Q |
418 |
actatctccctttgtaaccactgtgttgctgttaccaacaaca |
460 |
Q |
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| T |
2782478 |
actatctccctttgtaaccactgtgttgctgttaccaacaaca |
2782520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 519 - 644
Target Start/End: Original strand, 2782576 - 2782701
Alignment:
| Q |
519 |
agaaaatcaagtggttccatggaaatctacaactccaccaccagtttcttcttgttcttcaaatagtgcaaactaatgctaccaactagtataaatatat |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2782576 |
agaaaatcaagtggttccatggaaatctacaactccaccaccagtttcttcttgttcttcaaatagtgcaaactaatgctaccaactagtataaatatat |
2782675 |
T |
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| Q |
619 |
atcctgtaatttttcttcctctcttc |
644 |
Q |
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| T |
2782676 |
ttcctgtaatttttcttcctctcttc |
2782701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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