View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7911_low_4 (Length: 469)
Name: NF7911_low_4
Description: NF7911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7911_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 217 - 459
Target Start/End: Original strand, 8169285 - 8169530
Alignment:
| Q |
217 |
attcattcaaattgatataatacattgaaaacaact---taacttttgagagaaagtggtctattactacaaacaataactaatcaacccttagcatgag |
313 |
Q |
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| T |
8169285 |
attcattcaaattgatataatacattcaaaacaacaacgtaacttttgagagaaagtggtctattactacaaacaataactaatcaacccttagcatgag |
8169384 |
T |
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| Q |
314 |
gaatttcatcggtagacaggaaactaaaaatacagaaatcttctacattccctttgttataaataccctttctgaacaatccctccctttggaaacctac |
413 |
Q |
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| T |
8169385 |
gaatttcatcggtagacaagaaactaaaaatacagaaatcctctacattccctttgttataaataccctttctgaacaatccctccctttggaaaccaac |
8169484 |
T |
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| Q |
414 |
cttttccaacagtttttgagaagctatgttgtctggacgagtatta |
459 |
Q |
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| T |
8169485 |
cttttccaacagtctttgagaagctatgttgtctggacgagtatta |
8169530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 8168901 - 8169036
Alignment:
| Q |
18 |
ttaacattgctacattatcataactagatttgaactcaaacctctagttaaactagaagagatcactaatcatctcattcaaatatttttgggtaataga |
117 |
Q |
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| T |
8168901 |
ttaacattgctgcattctcataattagattcgaactcaaacctctagttaaactagaagagatcactaatcatctcattcaaatatttttggataataga |
8169000 |
T |
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| Q |
118 |
gtaacgttaaagtgtcatgtatataataacatgtgt |
153 |
Q |
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| T |
8169001 |
gtaacgttaaagtgtcatgtatataataacatgtgt |
8169036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 447
Target Start/End: Original strand, 8172010 - 8172149
Alignment:
| Q |
308 |
catgaggaatttcatcggtagacaggaaactaaaaatacagaaatcttctacattccctttgttataaataccctttctgaacaatccctccctttggaa |
407 |
Q |
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| T |
8172010 |
catgaggaatttcatcagtagacaagaaactaaaaatatatgcatccacaatattccctttgtgatgaaaaacctttctgaacaatccctccctatggaa |
8172109 |
T |
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| Q |
408 |
acctaccttttccaacagtttttgagaagctatgttgtct |
447 |
Q |
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| T |
8172110 |
gccaactttttccaacaccctttgtgaagccatgttgtct |
8172149 |
T |
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