View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7911_low_5 (Length: 411)
Name: NF7911_low_5
Description: NF7911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7911_low_5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 192 - 411
Target Start/End: Original strand, 46185519 - 46185739
Alignment:
| Q |
192 |
atacattgtatgaaatgctcttt-gtgttttttaatagacctgaagtcaaaagtctagttcgtaataaatatcaagtaggtcacttagnnnnnnnggtca |
290 |
Q |
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| T |
46185519 |
atacattgtatgaaatgctcttttgtgttttttaatagacctgaagtcaaaagtctagttcgtaataaatatcaagtaggtcacttagtttatttggtga |
46185618 |
T |
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| Q |
291 |
ttctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggtattctcacctgtgttcagatacctgcactgtgaattctaaaaagt |
390 |
Q |
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| T |
46185619 |
ttctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggtattctcacctgtgttcagatacctccactgtgaattctaaaaagt |
46185718 |
T |
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| Q |
391 |
attgtactctatcatcaaatg |
411 |
Q |
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| T |
46185719 |
attgtactctatcatcaaatg |
46185739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 46185337 - 46185483
Alignment:
| Q |
50 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaa |
149 |
Q |
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| T |
46185337 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctccagagaagacgaagcatcatgaa |
46185436 |
T |
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| Q |
150 |
gtaacaattcgtttcaatgtgactgttggacctgacctgagtataca |
196 |
Q |
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| T |
46185437 |
gtaacaattcgtttcaatgtgactgttgcacctgacctgagtataca |
46185483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 346
Target Start/End: Original strand, 46169863 - 46169957
Alignment:
| Q |
252 |
gtaataaatatcaagtaggtcacttagnnnnnnnggtcattctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggta |
346 |
Q |
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| T |
46169863 |
gtaataaatgtcaagtaggtcacttagtttttttggtgattctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggta |
46169957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 46185251 - 46185306
Alignment:
| Q |
15 |
aatatggtgagttttgtttaattttcatttggtactttacattctaaatgtttgat |
70 |
Q |
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| T |
46185251 |
aatatggtgagttttgtttaattttcatttggtactttacattctaaatgtttgat |
46185306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 5895340 - 5895242
Alignment:
| Q |
65 |
tttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaagtaacaattcgttt |
163 |
Q |
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| T |
5895340 |
tttgatagtgaacaaattcagatgagaagagaatgattgagatgacaaagtggaagctccaccaaagaagacgaagcaccgggaagtaacaatttgttt |
5895242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 5895400 - 5895343
Alignment:
| Q |
39 |
tcatttggtactttacattctaaatgtttgatagtgaacaaattcagaagaaaagaga |
96 |
Q |
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| T |
5895400 |
tcatttggtactttacattctaactatttgatagtgatcaaattcagatgagaagaga |
5895343 |
T |
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