View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7911_low_6 (Length: 383)
Name: NF7911_low_6
Description: NF7911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7911_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 48091837 - 48092179
Alignment:
| Q |
19 |
ggcattggaattctcaatgataccggaatccagtttgtaagtgaaattcttatcttagtgtatttttgaattgacattgtgattttgtcaaactcacgca |
118 |
Q |
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| T |
48091837 |
ggcattggaattctcaatgataccggaatccagtttgtaagtgaaattcttatcttagtgtatttttgaattgacattgtgattttgtcaaactcacgca |
48091936 |
T |
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| Q |
119 |
cgggtctaattcaaacatacattaaatatatacattttaatttgat---catgacatgatctactatgtattacaattaattgcagataaacataattag |
215 |
Q |
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| T |
48091937 |
cgggtctaattcaaacatacatt-------------ttaatttgatattcatgacatgatcta---tgtattacaattaattgcagataaacataattag |
48092020 |
T |
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| Q |
216 |
aatatttaggcaattggagtattttcaacaataccagcagagagtgagtggtcttattggacctgaacaaactcagagcttagtgaatggagcattagta |
315 |
Q |
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| T |
48092021 |
aatatttaggcaattggagtattttcaacaataccagcagagagtgagtggtcttattggacctgaacaaactcagagcttagtgaatggagcattagta |
48092120 |
T |
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| Q |
316 |
ctcatcactcttggaggaaatgattttgtgaataactattacttagtgccattctctgc |
374 |
Q |
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| T |
48092121 |
ctcatcactcttggaggaaatgattttgtgaataactattacttagtgccattctctgc |
48092179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 48084150 - 48084189
Alignment:
| Q |
22 |
attggaattctcaatgataccggaatccagtttgtaagtg |
61 |
Q |
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| T |
48084150 |
attggaattctcaatgataccggattccagtttgtaagtg |
48084189 |
T |
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