View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7911_low_7 (Length: 369)
Name: NF7911_low_7
Description: NF7911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7911_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 15920722 - 15921064
Alignment:
| Q |
14 |
atggacatcaatatttgttgctaattatggcnnnnnnnttgataaagatgatagcgaagcatgtaagcttttgcttaaaaagattgaagataatattgaa |
113 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15920722 |
atggacatcaatatttgttgcttattatggcaaaaaaattgataaagatgttaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaa |
15920821 |
T |
|
| Q |
114 |
gaattgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacacttta |
213 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920822 |
tatttgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacacttta |
15920921 |
T |
|
| Q |
214 |
tggaaaatgttgatgaccaatgcccggaagccctaaatcttaaatttgaccgacttatgtacatatggagagatactatcttgctagagaaccaacttcc |
313 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||| ||| |||||||||||||||||| ||| |||||||||| ||||| |
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| T |
15920922 |
tggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactaatttgttagagaaccagcttcc |
15921021 |
T |
|
| Q |
314 |
aaacaaaatgcttgagattctatgcgaagaagcgggttttgat |
356 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
15921022 |
aaacaaaatgcttgagattctatgcaaagaagcgggttatgat |
15921064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 15899694 - 15900024
Alignment:
| Q |
14 |
atggacatcaatatttgttgctaattatggcnnnnnnnttgataaagatgatagcgaagcatgtaagcttttgcttaaaaagattgaagataatattgaa |
113 |
Q |
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| T |
15899694 |
atggacatcaatatttgttgctgattatggcaaaaaaattgataaagatgctaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaa |
15899793 |
T |
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| Q |
114 |
gaattgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacacttta |
213 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15899794 |
gatttgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacacttta |
15899893 |
T |
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| Q |
214 |
tggaaaatgttgatgaccaatgcccggaagccctaaatcttaaatttgaccgacttatgtacatatggagagatactatcttgctagagaaccaacttcc |
313 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||| ||| ||||||||||||||||| | ||| | ||||| |||||||| |
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| T |
15899894 |
tggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatacttttttgttggagaatcaacttcc |
15899993 |
T |
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| Q |
314 |
aaacaaaatgcttgagattctatgcgaagaa |
344 |
Q |
| |
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||| | ||||||||||||||||||||||||| |
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| T |
15899994 |
aaaaataatgcttgagattctatgcgaagaa |
15900024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 15874375 - 15874044
Alignment:
| Q |
14 |
atggacatcaatatttgttgctaattatggcnnnnnnnttgataaagatgatagcgaagcatgtaagcttttgcttaaaaagattgaagataatattgaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874375 |
atggacatcaatatttgttgctaattatgccaaaaaaattgataaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaa |
15874276 |
T |
|
| Q |
114 |
gaattgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacacttta |
213 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874275 |
aatgtgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacacttta |
15874176 |
T |
|
| Q |
214 |
tggaaaatgttgatgaccaatgcccggaagccctaaatcttaaatttgaccgacttatgtacatatggagagatactatcttgctagagaaccaacttcc |
313 |
Q |
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||| |||||||||||||||||||||| | |||||||| ||||| ||||||| ||| ||| ||||||||||||||||| | ||| | ||||| |||||||| |
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| T |
15874175 |
tgggaaatgttgatgaccaatgcccgaatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttcc |
15874076 |
T |
|
| Q |
314 |
aaacaa-aatgcttgagattctatgcgaagaa |
344 |
Q |
| |
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|| || ||||||||||||||||||||||||| |
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| T |
15874075 |
caagaataatgcttgagattctatgcgaagaa |
15874044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 338
Target Start/End: Complemental strand, 14060734 - 14060466
Alignment:
| Q |
70 |
aagcatgtaagcttttgcttaaaaagattgaagataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatct |
169 |
Q |
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||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||| |||||||| |
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| T |
14060734 |
aagcatgcaaacttttgcttaacaagattgaagataatattgaagaattgaagaacatgttcactgaagatgcaattgaaggattcaatgacaatgatct |
14060635 |
T |
|
| Q |
170 |
tgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggaagccctaaatcttaaatttgaccgactt |
269 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||||| || |||| |||||| |||||||||| || |||| ||||||||||| ||||||| | | |
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| T |
14060634 |
tgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaagtttgaccaattg |
14060535 |
T |
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| Q |
270 |
atgtacatatggagagatactatcttgctagagaaccaacttccaaacaaaatgcttgagattctatgc |
338 |
Q |
| |
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||||| |||||||||||| | ||| ||||||||||||||||| || |||||||||||||| ||||| |
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| T |
14060534 |
atgtatatatggagagatgtttcgttgttagagaaccaacttccataccaaatgcttgagattatatgc |
14060466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 81 - 338
Target Start/End: Complemental strand, 14049352 - 14049095
Alignment:
| Q |
81 |
cttttgcttaaaaagattgaagataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatat |
180 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||||||||||| |||||||| || |||||||||||||| | |||||| || |||||||||||||||| |
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| T |
14049352 |
cttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaacgatcttgcttggatat |
14049253 |
T |
|
| Q |
181 |
tgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggaagccctaaatcttaaatttgaccgacttatgtacatatg |
280 |
Q |
| |
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|||| |||||||||||||| ||||| || |||||||||||||| |||||||||| || |||| ||||||||||| ||||| | | | ||||||||||| |
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| T |
14049252 |
tgttcgtggatggatgttccttgctgcattttatggaaaatgtcgatgaccaatatcctgaagggctaaatcttaagtttgatcaattgatgtacatatg |
14049153 |
T |
|
| Q |
281 |
gagagatactatcttgctagagaaccaacttccaaacaaaatgcttgagattctatgc |
338 |
Q |
| |
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||||||| || ||| | ||||||||||||||| || |||||||||||||| ||||| |
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| T |
14049152 |
gagagatgttaagttgttggagaaccaacttccataccaaatgcttgagattatatgc |
14049095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 21785704 - 21785738
Alignment:
| Q |
174 |
tggatattgtttgtggatggatgttctttgctaca |
208 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |
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|
| T |
21785704 |
tggatgttgtttgtggatggatgttctttgctaca |
21785738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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