View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7911_low_8 (Length: 353)
Name: NF7911_low_8
Description: NF7911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7911_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 5775290 - 5775613
Alignment:
| Q |
14 |
atatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcacgaagcatctccatcaccttcttccggatccta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5775290 |
atatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcgcgaagcatctccatcaccttcttccggatccta |
5775389 |
T |
|
| Q |
114 |
tacagctttgatatttcatcctccgaaaacaccatcgtggagtcgctcttccaagtccctctaataaaaaacagtacccaagtataaatagaggcaaaac |
213 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5775390 |
tacagctttgatatttcatcctccgaaaacaccattgtggagtcgctcttccaagtccctctaatagaaaacagtacccaagtataaatagaggcaaaac |
5775489 |
T |
|
| Q |
214 |
aaacaaattaatcataactgttatgcaaataataacagtgtaaattttgtttagacaactattgaatcaaatcaaatcacattataatcataatctctta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775490 |
aaacaaattaatcataactgttatgcaaataataacagtgtaaattttgtttagacaattattgaatcaaatcaaatcacattataatcataatctctta |
5775589 |
T |
|
| Q |
314 |
caacaattatagaaaccctaatct |
337 |
Q |
| |
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||| || ||||||||||||||||| |
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| T |
5775590 |
caataagtatagaaaccctaatct |
5775613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 5768635 - 5768960
Alignment:
| Q |
14 |
atatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcacgaagcatctccatcaccttcttccggatccta |
113 |
Q |
| |
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|||| ||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||| || | |||||||||||||||| |||||||||||||| |
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| T |
5768635 |
atatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatctctaagcatctccatcaccgtcttccggatccta |
5768734 |
T |
|
| Q |
114 |
tacagctttgatatttcatcctccgaaaacaccatcgtggagtcgctcttccaagtccctctaata--aaaaacagtacccaagtataaatagaggcaaa |
211 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| || |||||||||| ||||||||| |
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| T |
5768735 |
tacagcttagatatttcatcctccgaaaacaccattgtggagtcgctcttctaagtccctctaataggaaaaacagaactcaagtataaacagaggcaaa |
5768834 |
T |
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| Q |
212 |
acaaacaaattaatcataactgttatgcaaataataacagtgtaaattttgtttagacaactattgaatcaaatcaaatcacattataatcataatctct |
311 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||||| |
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| T |
5768835 |
ataaacaaattaatcataactgttatgcaaataataacagtgtaaattttgtttagacaactacagaattaaatcaaatcatattataatcatagtctct |
5768934 |
T |
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| Q |
312 |
tacaacaattatagaaaccctaatct |
337 |
Q |
| |
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||| |||| ||||||||||||||||| |
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|
| T |
5768935 |
tacgacaagtatagaaaccctaatct |
5768960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 5774915 - 5775046
Alignment:
| Q |
14 |
atatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcacgaagcatctccatcaccttcttccggatccta |
113 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||| || | |||||||||||||||| |||||||||||||| |
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| T |
5774915 |
atatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatccctaagcatctccatcaccgtcttccggatccta |
5775014 |
T |
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| Q |
114 |
tacagctttgatatttcatcctccgaaaacac |
145 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |
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| T |
5775015 |
tacagcttcgatatttcatcctccgaaaacac |
5775046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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