View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7912_high_3 (Length: 515)
Name: NF7912_high_3
Description: NF7912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7912_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 37129512 - 37129049
Alignment:
| Q |
19 |
ctttgttcaagtgataaaactcaaacttttattaactagtggagctcatttttatatcactgc-----nnnnnnnnnnnnnnctaagcattgggtcattg |
113 |
Q |
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| T |
37129512 |
ctttgttcaagtgataaaactcaaacttttattaactagtggagctcatttttagatcactgctttttttttttctttttttctaagcattgggtcattg |
37129413 |
T |
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| Q |
114 |
catgtgaaataagaccaaatggaaaggaaagacttgacttaattgctcatttgacttaattgctcattttgttgaattatttgtttgcttcctgcaagtt |
213 |
Q |
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| T |
37129412 |
catgtgaaataagaccaaat-----ggaaagacttgactta-----------------attgctcattttgttgaattatttgtttgcttcctgcaagtt |
37129335 |
T |
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| Q |
214 |
ggagttggagacttttggagttggttttaaggaaatatcttggaaaagtttgttgatgccaagtatggtagagtggagggaggtcaatgctatctatatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37129334 |
ggagttggagacttttggagttggttttaaggaaatatcttggaaaagtttgttgatgccaagtatggtagagtggagggaggtcaatgctatctatatc |
37129235 |
T |
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| Q |
314 |
ggctcaaatactgttacaaaagatgcaccagtcaaaaacattttaagtatgtatttgactcgtttatttttcgtatgatcttgtcttctagtgttgtgag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37129234 |
ggctcaaatactgttacaaaagatgcaccagtcaaaaacattttaagtatgtatttgactcgtttatttttcgtatgatcttgtcttctagtgttgtgag |
37129135 |
T |
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| Q |
414 |
atgtaattcacatagtattattctatggttatcattagacaataactatagtttttctgatcttagccttttcacgctatattctt |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37129134 |
atgtaattcacatagtattattctatggttatcattagacaataactatagtttttctgatcttagccttttcacactatattctt |
37129049 |
T |
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