View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7912_high_4 (Length: 456)
Name: NF7912_high_4
Description: NF7912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7912_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 139 - 438
Target Start/End: Complemental strand, 7301023 - 7300739
Alignment:
| Q |
139 |
gtgggttgatacagaggggtaataatgtaatgtaatgatggaaatggtgaagatcaaatataggttgattttgatcaaagtgattatagttaatccagtt |
238 |
Q |
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| T |
7301023 |
gtgggttgatacagaggggtaataatgtaatgtaatgatggaaatggtgaagatcaaatataggttgattttgatcaaagtgattat------------- |
7300937 |
T |
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| Q |
239 |
atttggaaactgataatctttttatgattatttctcgnnnnnnncttccacaggaaaatgaaacattgttgtttcgagaaaagtgttaaaggactgctaa |
338 |
Q |
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| T |
7300936 |
--ttggaaactgataatctttttatgattatttctcgtttttttcttccacaggaaaatgaaacattgttgtttcgagaaaagtgttaaaggactgctaa |
7300839 |
T |
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| Q |
339 |
aagcccatcagagctttcattcatcaatatcattcattcaactagcccttaattatttttagtctaggattagattaaattagaatagaaaatgctaagt |
438 |
Q |
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| T |
7300838 |
aagcccaccagagctttcattcatcaatatcattcattcaactagcccttaattatttttagtctaggattagattaaattagaatagaaaatgctaagt |
7300739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 7301147 - 7301107
Alignment:
| Q |
15 |
gattattctaggagatgttgtttttcttagacctgaacagg |
55 |
Q |
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| T |
7301147 |
gattattctaggagatgttgtttttcttagacctgaacagg |
7301107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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