View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7912_high_5 (Length: 449)
Name: NF7912_high_5
Description: NF7912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7912_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 1406119 - 1406551
Alignment:
| Q |
1 |
agaatcttatgaggcaaaggtatgtttgtcattggtgatttgtctttctcttcaagccatttttcaatcgctttgcgatcatacgtatatccatccgcgg |
100 |
Q |
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| T |
1406119 |
agaatcttatgaggcaaaggtatgtttgtcattggtgatttgtctttctcttcaagccatttttcaatcgctttgcgatcatacgtatatccatctgcgg |
1406218 |
T |
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| Q |
101 |
caacacaaggatcatccatcacatcctgcatcaaatcatatgaagtatgataagcatcatccaaaatattaacaacctattgtccacaaggtgttagtcc |
200 |
Q |
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| T |
1406219 |
cgacacaaggatcatccatcacatcctgcatcaaatcatatgaagtatgataagcatcatccaaaatattaacaacctattgtccacgaggtgttagtcc |
1406318 |
T |
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| Q |
201 |
agtggtaatagtttgactttgtaactttaagggacggagttcaaatctccattcttctagttataaaacggtcattagttctactaattcaaataattac |
300 |
Q |
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| T |
1406319 |
agtggtaatagtttgactttgtaactttaagggacggagttcaaatctccattcttctagttataaaacggtcattagttctactaattcaaataattac |
1406418 |
T |
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| Q |
301 |
tcccaactgacatnnnnnnntactaactgatataactagaactaacaactcagaaaggattaactaactcataacaaataattagcactaatagtagatt |
400 |
Q |
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| T |
1406419 |
tcccaactgacat-aaaaaatactaactgatataactagaactaacaactcagaaaggattaacaaactcataacaaataattagcactaatagtagatt |
1406517 |
T |
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| Q |
401 |
agaaaatgaatgtagttccatcatggagtattat |
434 |
Q |
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| T |
1406518 |
agaaaatgaatgtagtgccatcatggagtattat |
1406551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 1397965 - 1398076
Alignment:
| Q |
25 |
tttgtcattggtgatttgtctttctcttcaagccatttttcaatcgctttgcgatcatacgtatatccatccgcggcaacacaaggatcatccatcacat |
124 |
Q |
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| T |
1397965 |
tttgtcattggtgatttgtcattctcctcaagccacttttcaattgcattacgatcgtatgtatatccgtctgcagcaacacaaggatcgtccatcacat |
1398064 |
T |
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| Q |
125 |
cctgcatcaaat |
136 |
Q |
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| T |
1398065 |
cctgcatcaaat |
1398076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 52511926 - 52511882
Alignment:
| Q |
205 |
gtaatagtttgactttgtaactttaagggacggagttcaaatctc |
249 |
Q |
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| T |
52511926 |
gtaagagtttgactttgtaattttaagagacagagttcaaatctc |
52511882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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