View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7912_high_6 (Length: 445)
Name: NF7912_high_6
Description: NF7912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7912_high_6 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 11237766 - 11238186
Alignment:
| Q |
19 |
atgttgggcattgtccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaattctagaga |
118 |
Q |
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| T |
11237766 |
atgttgggcgttgtccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaattctagaga |
11237865 |
T |
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| Q |
119 |
tggtacttctaaaactcttgaatttccaaacatcaaaggttggatggtccttgaagtctaccaagagagtttgatatcaccatgttcttaataatagtag |
218 |
Q |
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| T |
11237866 |
tggtacttctaaaactcttgaatttccaaacatcaaaggttggatggtccttgaagtctaccaagagagtttgatatcaccatgttcttaataatagtag |
11237965 |
T |
|
| Q |
219 |
aatgcatgtagtaatgaggatgttatatgctatattatgtcacttgtgcatgaggtttatgaagaaccgggattcttcaactccctaactgcaacctgta |
318 |
Q |
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| T |
11237966 |
aatgcatgtagtaatgaggatgttatatgctatgttatgtcacttgtgcatgaggtttatgaagaaccgggattcttcaactccctaactgcaacctgta |
11238065 |
T |
|
| Q |
319 |
tgttaatttctatttgtgttatgtaccttttgtttgctgattaattcatggattattgttcattattagaccatgaaatatgttgcctgaggaattgtgg |
418 |
Q |
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| T |
11238066 |
tgttaatttctatttgtgttatgtaccttttgtttgctgattacttcatggattattgttcattattagacgatgaaatatgttgcctgaggaattgtgg |
11238165 |
T |
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| Q |
419 |
tgttagatttatattcttcga |
439 |
Q |
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| T |
11238166 |
tgttagatttattttattcga |
11238186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 30 - 282
Target Start/End: Complemental strand, 7168657 - 7168415
Alignment:
| Q |
30 |
tgtccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaattctagagatggtacttcta |
129 |
Q |
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| T |
7168657 |
tgtccttataccaaggcactttatcttactgaggatgaccaagtgttgctcaagtatcaagctgagttggttgtttacaattctagagatggtacgttta |
7168558 |
T |
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| Q |
130 |
aaactcttgaatttccaaacatcaaaggttggatggtccttgaagtctaccaagagagtttgatatcaccatgttcttaataatagtagaatgcatgtag |
229 |
Q |
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| T |
7168557 |
aaactcctgaaattcaacacatcaatcggtggttggtccctcaagtttatcaggagagtttgatatcaccttgttct---taacggtagaatgcatgtaa |
7168461 |
T |
|
| Q |
230 |
taatgaggatgttatatgctatattatgtcacttgtgcatgaggtttatgaag |
282 |
Q |
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| T |
7168460 |
taatg-------tagatactatgttacgtcacttgtgcatgaggtttatgaag |
7168415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 7199944 - 7199764
Alignment:
| Q |
31 |
gtccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaattctagagatggtacttctaa |
130 |
Q |
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| T |
7199944 |
gtccttataccaaggcattttatgtttatgaggatgatcaagtgctgctagagtgtcagtcaaagttggttctttacaattctagggatggtacttttaa |
7199845 |
T |
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| Q |
131 |
aactcttgaatttccaaacatcaaaggttggatggtccttgaagtctaccaagagagtttgatatcaccatgttcttaata |
211 |
Q |
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| T |
7199844 |
gagtcttgaaatccaaagcacagatggttggatggttccacaagtctaccaacagagtttgatatcactttgttcttaata |
7199764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 7174338 - 7174233
Alignment:
| Q |
32 |
tccttataccaatgcactttatgttactgaggatgatcaggtgctgctggagaatcagttcgagttggtcgtttacaattctagagatggtacttctaaa |
131 |
Q |
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||||||||| || |||||||||||| |||||||||||| |||||||| ||| || | | ||||||| ||||||||||||||||||||||||| ||| |
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| T |
7174338 |
tccttatacaaaggcactttatgtttatgaggatgatcaagtgctgctagagtatatgatgaagttggttgtttacaattctagagatggtacttttaag |
7174239 |
T |
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| Q |
132 |
actctt |
137 |
Q |
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|||||| |
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| T |
7174238 |
actctt |
7174233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 7173985 - 7173914
Alignment:
| Q |
316 |
gtatgttaatttcta-tttgtgttatgtaccttttgtttgctgattaattcatggattattgttcattatta |
386 |
Q |
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|||||||||||| || ||||||||| || |||| ||||||||| ||| |||||||||||| |||||||||| |
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| T |
7173985 |
gtatgttaatttttaatttgtgttaggtgccttatgtttgctggttacttcatggattatctttcattatta |
7173914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 333 - 423
Target Start/End: Original strand, 29344 - 29434
Alignment:
| Q |
333 |
tgtgttatgtaccttttgtttgctgattaattcatggattattgttcattattagaccatgaaatatgttgcctgaggaattgtggtgtta |
423 |
Q |
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| T |
29344 |
tgtgttatgtaccttttgtttgctggttacttcatggattattgttcgttattagacgatgaaatatgttgcctgagaaattgtgatgtta |
29434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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