View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7912_low_1 (Length: 793)
Name: NF7912_low_1
Description: NF7912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7912_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 252 - 775
Target Start/End: Complemental strand, 4637364 - 4636839
Alignment:
| Q |
252 |
tgtaactaaataaaaattgttcaaatatcttattcattttttatagaagataaatctagacaagtgaagcatccctcatgcaaagttagagagaaatacc |
351 |
Q |
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| T |
4637364 |
tgtaactaaataaaaattgttcaaatatcttattcattttttatagaagataaatctagacaagtgaagcacccctcatgcaaagatagagagaaatacc |
4637265 |
T |
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| Q |
352 |
aaccaactttattaatgcgttccttnnnnnnnntgttaatgaaattctaaatttgaacccaaagcgcaatatgtctaagtaaatggccaaaatgtatgtt |
451 |
Q |
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| T |
4637264 |
aaccaactttattaatgccttccttaaaaaaaatgttaatgaaattctaaatttgaacccaaattgcaatatgtctaagtaaatggccaaaatgtatgtt |
4637165 |
T |
|
| Q |
452 |
gttacgacctcaaatttacaataatgtcttttcgatgtattgtccattttaaatcttgtgtattataannnnnnnnnn---cctttgtaaacgagttctt |
548 |
Q |
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| T |
4637164 |
gttacgacctcaaatttacaataatatcttttcgatgtattgtccattttgaatcttgtgtattatgatttatttatttttcctttgtaaacgagttctt |
4637065 |
T |
|
| Q |
549 |
gttaaattgttgtttataaacgatcattgacttcgatttacaagctaactgaaaccttttaaatgtgtcggagctgtagtctccatccaggttgaggagg |
648 |
Q |
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| T |
4637064 |
gttaaattgttgtttataagcgatcattgacttcgatttacaagctaactgaaaccttttaaatgtgtcggagctgtagtctc-atcaaggttgaggagg |
4636966 |
T |
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| Q |
649 |
taaagggtccatctattagtcattattgagggcatttagaccctagtttccaaagacaacgacaatatttcaattttcaacctcaagtctacaatgcagt |
748 |
Q |
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| T |
4636965 |
taaagggtccatctattagtcattattgagggcatttagaccctagtttccaaagacaacgacaatatttcaattttaaacctcaagtctacaatgcagt |
4636866 |
T |
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| Q |
749 |
tctaatgcattatatgctttgttcatt |
775 |
Q |
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| T |
4636865 |
tctaatgcattatatgctttgttcatt |
4636839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 4637607 - 4637434
Alignment:
| Q |
9 |
agtagcagagaagattagaaaacacatctgaagcagatatactttactgtagttcactatcagtttgagttgagtctttttctgaccgtgccnnnnnnnc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4637607 |
agtaccagagaagattagaaaacacatctgaagcagatatactttactgtagttcactatcagtttgagttgagtctttttctgaccgtgcctttttttc |
4637508 |
T |
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| Q |
109 |
cactgtcaccatcactatgttcagtcacacatgacccacaaacacaatgataaacatgaggaaatcttagttgg |
182 |
Q |
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| T |
4637507 |
cactgtcaccatcactatgttcagtcacacatgacccacaaacacaatgataaacatgaggaaatcttagttgg |
4637434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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