View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7912_low_12 (Length: 333)

Name: NF7912_low_12
Description: NF7912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7912_low_12
NF7912_low_12
[»] chr3 (13 HSPs)
chr3 (34-324)||(34328248-34328532)
chr3 (34-178)||(8922884-8923029)
chr3 (66-178)||(41325822-41325934)
chr3 (34-136)||(7267412-7267515)
chr3 (35-164)||(1772881-1773009)
chr3 (34-178)||(8923551-8923695)
chr3 (66-178)||(50107568-50107680)
chr3 (34-180)||(41326465-41326610)
chr3 (41-136)||(1773567-1773662)
chr3 (34-124)||(50108223-50108312)
chr3 (34-146)||(10991007-10991119)
chr3 (38-141)||(10987865-10987969)
chr3 (43-154)||(34329057-34329172)
[»] chr6 (2 HSPs)
chr6 (34-183)||(3295722-3295870)
chr6 (36-95)||(3295106-3295166)
[»] chr8 (6 HSPs)
chr8 (35-179)||(38443033-38443178)
chr8 (34-124)||(44870161-44870250)
chr8 (39-123)||(38443534-38443619)
chr8 (61-141)||(10910965-10911045)
chr8 (93-179)||(11519349-11519435)
chr8 (66-118)||(41890008-41890060)
[»] chr7 (4 HSPs)
chr7 (34-179)||(48204146-48204290)
chr7 (34-158)||(48204897-48205021)
chr7 (46-124)||(18923378-18923456)
chr7 (56-127)||(35752376-35752446)
[»] chr1 (5 HSPs)
chr1 (34-180)||(49385708-49385853)
chr1 (34-141)||(2428433-2428539)
chr1 (35-124)||(49385139-49385228)
chr1 (79-178)||(1764516-1764614)
chr1 (47-124)||(15668217-15668294)
[»] chr5 (2 HSPs)
chr5 (36-164)||(31600462-31600589)
chr5 (34-124)||(31601075-31601165)
[»] chr2 (1 HSPs)
chr2 (56-178)||(39062847-39062968)
[»] chr4 (3 HSPs)
chr4 (46-118)||(45620922-45620993)
chr4 (78-141)||(45621844-45621907)
chr4 (110-178)||(48956637-48956705)
[»] scaffold0178 (1 HSPs)
scaffold0178 (109-178)||(18481-18550)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 34 - 324
Target Start/End: Complemental strand, 34328532 - 34328248
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgat 133  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||||||  | |||||||||||||||||| |||||||||| |||||||||||| |    
T  34328532 gcgcgtagccttgtttttgataaaacaggtgttttttctaacacttttaatctcagcctttgattttctattttaccacatgtcacacatctattatggt 34328433  T
Q  134 aaacggagtaaattgaacaaacctaaatggaataaagatgaactcaattaacacacaccaagttccatcttgaacgtgtagacaagatgttcttgctctt 233  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||      || ||||||| ||||||||    
T  34328432 aaacggagtaaatggagcaaacctaaatggaacaaagatgaactcaattaacacacaccaagttccatcttcaac------actagatgttattgctctt 34328339  T
Q  234 catcattgaatccaagtatctctaatagactaaattataagcttttacaaaatcaactttaaataaaatatgttatctctttctcttctta 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  34328338 catcattgaatccaagtatctctaatagactaaattataagcttttgcaaaatcaactttaaataaaatatgttatttctttctcttctta 34328248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 8923029 - 8922884
Alignment:
Q  34 gcgcgtagccttgtttttgataaaa-caaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatga 132  Q
    |||||||||||||||||| |||||| ||| || ||||| ||||  ||||||||| | || ||| |||||||||||||||||||||| ||||| || ||||    
T  8923029 gcgcgtagccttgttttttataaaaacaagtgctttttacaacctttttaatcccagcccttggttttctattttgccacatgtcacacatccatgatga 8922930  T
Q  133 taaacggagtaaattgaacaaacctaaatggaataaagatgaactc 178  Q
    |||| || ||||||||| |||||||||||||| |||||||||||||    
T  8922929 taaatggggtaaattgagcaaacctaaatggagtaaagatgaactc 8922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 41325934 - 41325822
Alignment:
Q  66 tttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgataaacggagtaaattgaacaaacctaaatggaa 165  Q
    ||||||||||  ||||||||| | || |||||||||||||||||||||||||| ||||| || |||||||| || ||||||||| ||||||||||||||     
T  41325934 tttttccaacctttttaatcccagcccttgattttctattttgccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggag 41325835  T
Q  166 taaagatgaactc 178  Q
    |||||||||||||    
T  41325834 taaagatgaactc 41325822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 7267412 - 7267515
Alignment:
Q  34 gcgcgtagccttgtttt-tgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatga 132  Q
    |||||||||||| |||| ||||||||||| ||||||||||||| |||||||||  | |||||| |||||||||||||||||||||| ||||| || ||||    
T  7267412 gcgcgtagccttcttttttgataaaacaagtgttttttccaacccttttaatctcagcctttggttttctattttgccacatgtcacacatccatgatga 7267511  T
Q  133 taaa 136  Q
    ||||    
T  7267512 taaa 7267515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 1773009 - 1772881
Alignment:
Q  35 cgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgata 134  Q
    ||||||||||||||||| ||||||||| || ||||| |||| |||||||||| |||| ||| |||||||||||||||||||||| | ||| || ||  ||    
T  1773009 cgcgtagccttgttttttataaaacaagtgcttttttcaac-cttttaatcccaacccttggttttctattttgccacatgtcacatatccatgatagta 1772911  T
Q  135 aacggagtaaattgaacaaacctaaatgga 164  Q
    || || ||||||||| ||||| ||||||||    
T  1772910 aatggggtaaattgagcaaacttaaatgga 1772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 8923551 - 8923695
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgat 133  Q
    ||||||| |||||||||| |||||| |||||  ||||||||| |||||||||| | || ||| ||||||| |||||||||||||| ||||| || ||| |    
T  8923551 gcgcgtacccttgttttttataaaaaaaatgcattttccaacccttttaatcccagcccttggttttctaatttgccacatgtcacacatccatgatggt 8923650  T
Q  134 aaacggagtaaattgaacaaacctaaatggaataaagatgaactc 178  Q
    ||| || |||||| || |||||| |||||||  ||||||| ||||    
T  8923651 aaatggggtaaatggagcaaacccaaatggagcaaagatggactc 8923695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 50107680 - 50107568
Alignment:
Q  66 tttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgataaacggagtaaattgaacaaacctaaatggaa 165  Q
    ||||||||||  ||||||||  | || ||| |||||||||||||||||||||| ||||| || |||||||| || ||||||||| |||||||||||| |     
T  50107680 tttttccaacctttttaatctcagcccttggttttctattttgccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatgtag 50107581  T
Q  166 taaagatgaactc 178  Q
    |||||||||||||    
T  50107580 taaagatgaactc 50107568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 41326465 - 41326610
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgat 133  Q
    ||||||| |||||||||| ||||||||||||  ||||||||| |||||||||| | || ||| ||||||  |||||||||||||| ||||| || ||| |    
T  41326465 gcgcgtacccttgttttttataaaacaaatgcattttccaacccttttaatcc-agcccttggttttctgatttgccacatgtcacacatccatgatggt 41326563  T
Q  134 aaacggagtaaattgaacaaacctaaatggaataaagatgaactcaa 180  Q
    |||  | |||||| || |||||| |||||||  ||||||| ||||||    
T  41326564 aaattgggtaaatggagcaaacccaaatggagcaaagatggactcaa 41326610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 1773567 - 1773662
Alignment:
Q  41 gccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgataaa 136  Q
    |||||||||||||||||||||||  ||||| ||||| || |||||  | || |||||||||||||||||||||| ||| |||||||| ||| ||||    
T  1773567 gccttgtttttgataaaacaaattcttttttcaacatttctaatctcagcccttgattttctattttgccacatatcacacatctatgatggtaaa 1773662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 50108223 - 50108312
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatc 124  Q
    ||||||| |||||||||| ||||||||||||  ||||||||| |||||||||| | || ||| ||||||| |||||||||||||| |||||    
T  50108223 gcgcgtacccttgttttttataaaacaaatgcattttccaacccttttaatcc-agcccttggttttctaatttgccacatgtcacacatc 50108312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 10991007 - 10991119
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgat 133  Q
    ||||||||||||  |||||  ||||||| |||||||||||||  ||||||| | | || ||  |||||||||||||||||||||| |||||||| ||| |    
T  10991007 gcgcgtagccttaattttggcaaaacaagtgttttttccaaccattttaattccagccctttgttttctattttgccacatgtcacacatctatgatggt 10991106  T
Q  134 aaacggagtaaat 146  Q
    ||| || ||||||    
T  10991107 aaatggggtaaat 10991119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 10987969 - 10987865
Alignment:
Q  38 gtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttcta-ttttgccacatgtcagacatctattatgataaa 136  Q
    ||||||||| || ||||||| ||| || ||||| |||| ||||||||| || |  ||||||||||| |||| |||||||||| |||||||| ||| ||||    
T  10987969 gtagccttgattctgataaatcaagtgcttttttcaacccttttaatcgtagctgttgattttctattttttccacatgtcacacatctatgatggtaaa 10987870  T
Q  137 cggag 141  Q
     ||||    
T  10987869 tggag 10987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 34329057 - 34329172
Alignment:
Q  43 cttgtttttgataaaacaaatgttttttccaacactttta----atcctaacctttgattttctattttgccacatgtcagacatctattatgataaacg 138  Q
    ||||||||||||||||||| || | |||||||||||||||    |||  | |  ||| |||||||||||| ||||||||| ||||| || ||  |||| |    
T  34329057 cttgtttttgataaaacaagtgctctttccaacacttttaatttatcacagctcttggttttctattttgtcacatgtcacacatccatgatagtaaatg 34329156  T
Q  139 gagtaaattgaacaaa 154  Q
    ||||||||||| ||||    
T  34329157 gagtaaattgagcaaa 34329172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 3295722 - 3295870
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgat 133  Q
    ||||||||| |||||||||||||||||| || | ||||||||||||||||||| |||| ||| |||||||||||| ||||||||| | ||| || ||| |    
T  3295722 gcgcgtagc-ttgtttttgataaaacaagtgctctttccaacacttttaatcccaacccttggttttctattttggcacatgtcacatatccatgatggt 3295820  T
Q  134 aaacggagtaaattgaacaaacctaaatggaataaagatgaactcaatta 183  Q
    ||| || |||||| || |||||||||||| |  ||||| | |||||||||    
T  3295821 aaatggggtaaatggagcaaacctaaatgaagcaaagacggactcaatta 3295870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 3295166 - 3295106
Alignment:
Q  36 gcgtagccttgtttttgataaaa-caaatgttttttccaacacttttaatcctaacctttg 95  Q
    |||||||||| |||||||||||| ||| || ||||||||||||||||||||  ||||||||    
T  3295166 gcgtagccttctttttgataaaaacaagtgctttttccaacacttttaatctcaacctttg 3295106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 38443178 - 38443033
Alignment:
Q  35 cgcgtagcctt-gtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgat 133  Q
    ||||||||||| |||||| ||||||||| || |||||||||| |||||||||  |||| ||| |||||||||||||||||||||| ||||| || ||| |    
T  38443178 cgcgtagccttagtttttcataaaacaagtgctttttccaacccttttaatctcaacccttggttttctattttgccacatgtcacacatccatgatggt 38443079  T
Q  134 aaacggagtaaattgaacaaacctaaatggaataaagatgaactca 179  Q
    ||| || |||||| || || || ||||||||  ||||||| |||||    
T  38443078 aaatggggtaaatggagcagacttaaatggagcaaagatggactca 38443033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 44870250 - 44870161
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatc 124  Q
    ||||||||| ||||||||||||||||||||| ||||| |||| |||||||||  |||| ||||||||||||||||| |||||||| |||||    
T  44870250 gcgcgtagc-ttgtttttgataaaacaaatgattttttcaacccttttaatctcaacccttgattttctattttgcgacatgtcacacatc 44870161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 38443534 - 38443619
Alignment:
Q  39 tagccttgtttttgataaaa-caaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacat 123  Q
    ||||||||||||||| |||| ||| || ||||||||||  ||||||||||| || |||||||||||||||||||||||||| ||||    
T  38443534 tagccttgtttttgacaaaaacaagtgatttttccaacctttttaatcctagcccttgattttctattttgccacatgtcacacat 38443619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 10910965 - 10911045
Alignment:
Q  61 aatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgataaacggag 141  Q
    |||| |||||||||| ||||||||| || || ||| ||||||||||| |||||||||| ||||| || ||| |||| ||||    
T  10910965 aatgctttttccaacccttttaatcttagccattggttttctattttaccacatgtcacacatccatgatggtaaatggag 10911045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 11519435 - 11519349
Alignment:
Q  93 ttgattttctattttgccacatgtcagacatctattatgataaacggagtaaattgaacaaacctaaatggaataaagatgaactca 179  Q
    |||||||| | |||| |||||||||| |||||||| ||   ||| || |||||||||| |||||||||| ||  |||||||||||||    
T  11519435 ttgattttatttttttccacatgtcacacatctatgatttgaaatggggtaaattgaagaaacctaaattgagcaaagatgaactca 11519349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 41890008 - 41890060
Alignment:
Q  66 tttttccaacacttttaatcctaacctttgattttctattttgccacatgtca 118  Q
    |||||| ||| |||||||||| ||||||||||||||  |||||| ||||||||    
T  41890008 tttttcaaacccttttaatccaaacctttgattttcgtttttgcaacatgtca 41890060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 48204290 - 48204146
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgat 133  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||||||||  | ||||||||||| | ||||||||||||||| ||||| || ||| |    
T  48204290 gcgcgtagccttgtttttgacaaaacaaa-gttttttccaacccttttaatctcagcctttgattttttcttttgccacatgtcatacatccatgatggt 48204192  T
Q  134 aaacggagtaaattgaacaaacctaaatggaataaagatgaactca 179  Q
    |||  |  ||||| || ||||| ||||||||  ||||||| |||||    
T  48204191 aaataggataaatggagcaaacttaaatggagcaaagatggactca 48204146  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 48204897 - 48205021
Alignment:
Q  34 gcgcgtagcc-ttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatga 132  Q
    |||||||||| |||||||||| ||||||| ||||||||||||| |||||||||| | || |||||||| ||||||||||||||||| ||||| || |||     
T  48204897 gcgcgtagcccttgtttttgacaaaacaa-tgttttttccaacccttttaatcccagcccttgattttttattttgccacatgtcacacatccatgatgg 48204995  T
Q  133 taaacggagtaaattgaacaaaccta 158  Q
    |||| || |||||| || ||||||||    
T  48204996 taaatggtgtaaatggagcaaaccta 48205021  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 18923378 - 18923456
Alignment:
Q  46 gtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatc 124  Q
    |||||||||||||||| || ||||| ||||||||||||||  |||| ||  |||||||||||| ||||| ||| |||||    
T  18923378 gtttttgataaaacaagtgcttttttcaacacttttaatctcaaccattagttttctattttgtcacatatcacacatc 18923456  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 35752446 - 35752376
Alignment:
Q  56 aaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctat 127  Q
    ||||||||||||||| |||  |||||||||  |||| |||||||| | ||||||||||||||| ||||||||    
T  35752446 aaacaaatgtttttttcaaaccttttaatcacaaccattgattttat-ttttgccacatgtcatacatctat 35752376  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 49385708 - 49385853
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgat 133  Q
    |||||||||||||||||||||||||||| || |||||||||| |||||||||  |||| ||  |||||||||||||||||||||| | ||| || ||| |    
T  49385708 gcgcgtagccttgtttttgataaaacaagtg-tttttccaacccttttaatctcaacccttagttttctattttgccacatgtcacatatccatgatggt 49385806  T
Q  134 aaacggagtaaattgaacaaacctaaatggaataaagatgaactcaa 180  Q
    ||| || |||||| |  ||| ||||||| ||  ||||||| ||||||    
T  49385807 aaatggggtaaatggtgcaatcctaaattgagcaaagatggactcaa 49385853  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 2428433 - 2428539
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgat 133  Q
    |||||| ||||||| ||||| ||||||| ||||||||||||| |||||||||| |||| |||||| | ||||||||||||||||| ||||| || ||| |    
T  2428433 gcgcgtggccttgtatttgacaaaacaa-tgttttttccaacccttttaatcccaacccttgattatttattttgccacatgtcacacatccatgatggt 2428531  T
Q  134 aaacggag 141  Q
    ||| ||||    
T  2428532 aaatggag 2428539  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 49385228 - 49385139
Alignment:
Q  35 cgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatc 124  Q
    ||||||||||| |||||  |||||||| ||||||||||||  |||||||| | | || ||||||||||||||| |||||||||| |||||    
T  49385228 cgcgtagccttctttttattaaaacaagtgttttttccaagccttttaattccagcccttgattttctatttttccacatgtcacacatc 49385139  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 1764614 - 1764516
Alignment:
Q  79 tttaatcctaacctttgattttctattttgccacatgtcagacatctattatgataaacggagtaaattgaacaaacctaaatggaataaagatgaactc 178  Q
    |||||||  ||||||||||| | | ||||||||||||||| ||||| || ||||||||  | ||||||||| ||||| ||||||||  ||||||| ||||    
T  1764614 tttaatctcaacctttgattatat-ttttgccacatgtcatacatccatgatgataaatagggtaaattgagcaaacttaaatggagcaaagatggactc 1764516  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 15668217 - 15668294
Alignment:
Q  47 tttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatc 124  Q
    ||||||||  ||||| || |||||||||| |||||||||| | |  |||||||||  ||||||||||||||| |||||    
T  15668217 tttttgattcaacaagtgatttttccaacccttttaatcccatcacttgattttcatttttgccacatgtcacacatc 15668294  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 31600589 - 31600462
Alignment:
Q  36 gcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgataa 135  Q
    |||||||||||||||||||||||||  || |||| ||||| |||||||||  | || ||| |||||||||||||||||||||| ||||| || |||||||    
T  31600589 gcgtagccttgtttttgataaaacaggtgctttt-ccaacccttttaatctcatcccttggttttctattttgccacatgtcacacatccatgatgataa 31600491  T
Q  136 acggagtaaattgaacaaacctaaatgga 164  Q
    | || |||||| || |||  |||||||||    
T  31600490 atggggtaaatggagcaagtctaaatgga 31600462  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 31601075 - 31601165
Alignment:
Q  34 gcgcgtagccttgtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatc 124  Q
    |||||||||||||||||| ||||||||| || |||||||||| | |||||||  | || ||| ||||||||||| |||||||||| |||||    
T  31601075 gcgcgtagccttgttttttataaaacaagtgctttttccaacccgtttaatctcagcccttggttttctattttaccacatgtcacacatc 31601165  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 39062847 - 39062968
Alignment:
Q  56 aaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgataaacggagtaaattgaacaaac 155  Q
    ||||||||| |||||||||  |||||||||||| || |||||||| | | ||||||||||||| |||||||| |    |||  | |||||||||||||||    
T  39062847 aaacaaatgctttttccaaaccttttaatcctagccattgattttat-tgttgccacatgtcatacatctatgacttgaaattgggtaaattgaacaaac 39062945  T
Q  156 ctaaatggaataaagatgaactc 178  Q
     ||||||||| ||||||| ||||    
T  39062946 ataaatggaacaaagatggactc 39062968  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 45620993 - 45620922
Alignment:
Q  46 gtttttgataaaacaaatgttttttccaacacttttaatcctaacctttgattttctattttgccacatgtca 118  Q
    |||||||||||||||| || |||||||| |  ||||||||  |||| ||||||||||||||||||||||||||    
T  45620993 gtttttgataaaacaa-tgctttttccatccattttaatctcaacccttgattttctattttgccacatgtca 45620922  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 45621844 - 45621907
Alignment:
Q  78 ttttaatcctaacctttgattttctattttgccacatgtcagacatctattatgataaacggag 141  Q
    ||||||||| |||| |||||||||||||||| ||||||||| ||||| || ||| |||| ||||    
T  45621844 ttttaatcccaacccttgattttctattttgtcacatgtcacacatccatgatggtaaatggag 45621907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 48956705 - 48956637
Alignment:
Q  110 cacatgtcagacatctattatgataaacggagtaaattgaacaaacctaaatggaataaagatgaactc 178  Q
    ||||||||| ||||| || | |||||| || ||||||| |||| | |||||||||||||||||| ||||    
T  48956705 cacatgtcacacatccatgaagataaatggggtaaattaaacatatctaaatggaataaagatggactc 48956637  T

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Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 18550 - 18481
Alignment:
Q  109 ccacatgtcagacatctattatgataaacggagtaaattgaacaaacctaaatggaataaagatgaactc 178  Q
    |||||||||| ||||| || ||| |||| || ||||||||||||||| |||||||| |||||||| ||||    
T  18550 ccacatgtcacacatccatgatggtaaatggtgtaaattgaacaaacttaaatggagtaaagatggactc 18481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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