View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7912_low_13 (Length: 310)
Name: NF7912_low_13
Description: NF7912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7912_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 4897056 - 4896794
Alignment:
| Q |
1 |
aggaagtgagagataaacctcaaccaggcagtggaaggctactgcnnnnnnnnnn--gttctttttcttaatatatagccactctgattttggtaggata |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4897056 |
aggaagtgagaaataaacctcaaccaggcagtagaaggctactgcttttttttttttgttctttt-cttaatatatagccactctgattttggtaggata |
4896958 |
T |
|
| Q |
99 |
tgtgaagttttgttgagatggtgatgttagagagatgaaaagaaatggtgtgttagtggtttttagaactttgggtggatcaaagagcatatatattttt |
198 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||| |
|
|
| T |
4896957 |
tgagaagttttgttcagatggtgatgttagagacgtgaaaagaaatggtatgttagtggtttttagaactttgggtggatcataaagcaaatatattttt |
4896858 |
T |
|
| Q |
199 |
aaaactgatacaaaagatgaccnnnnnnncaacaaattattcactgtttggaggagcaattctc |
262 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4896857 |
aaaacaaatacaaaggatgaccaaaaaatcaacaaattattcactgtttggaagagcaattctc |
4896794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 4902697 - 4902641
Alignment:
| Q |
236 |
tattcactgtttggaggagcaattctcgaagggaatttattgaacaagttgttgttg |
292 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4902697 |
tattcactctttggaagagcaattttcgaagggaatttattgaacaagttgttgttg |
4902641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 4902823 - 4902698
Alignment:
| Q |
57 |
ttctttttcttaatatatagccactctgattttggtaggatatgtgaag-ttttgttgagatggtgatgttagagagatgaaaagaaatggtgtgttagt |
155 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||||||||| | ||| |||| |||| ||||||||||||||| || | ||||| || ||||||||||| |
|
|
| T |
4902823 |
ttctttttcttagtatatagccattctgtttttggtagtaaatgagaaggttttcatgagatggtgatgttgaag-gtggaaaataa--ggtgtgttagt |
4902727 |
T |
|
| Q |
156 |
ggtttttagaactttgggtggatcaaaga |
184 |
Q |
| |
|
| |||||||||||||||| |||||||||| |
|
|
| T |
4902726 |
gatttttagaactttgggaggatcaaaga |
4902698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 4929958 - 4929887
Alignment:
| Q |
132 |
gatgaaaagaaatggtgtgttagtggtttttagaactttgggtggatcaaagagcatatatatttttaaaac |
203 |
Q |
| |
|
|||||||| ||| || |||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
4929958 |
gatgaaaataaaaggactgttagtgatttttagaatattgggtggatcaaagagcctatatatttttaaaac |
4929887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 4908538 - 4908488
Alignment:
| Q |
243 |
tgtttggaggagcaattctcgaagggaatttattgaacaagttgttgttga |
293 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
4908538 |
tgtttggaagaacaattctcaaagggaatttagtgaacaagttgttattga |
4908488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 4938292 - 4938201
Alignment:
| Q |
111 |
ttgagatggtgatgttagagagatgaaaagaaatggtgtgttagtggtttttagaactttgggtggatcaaagagcatatatatttttaaaact |
204 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| || |||| ||| |||||||| |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
4938292 |
ttgagatggtgatgttag-gag-tgaaaagaaaagggttgttggtgatttttagatagttgggtggatcaaagagccactatatttctaaaact |
4938201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 4949904 - 4949824
Alignment:
| Q |
132 |
gatgaaaagaaatggtgtgttagtggtttttagaactttgggtggatcaaagagcatatatatttttaaaactgatacaaa |
212 |
Q |
| |
|
|||||||||||| || || |||||| |||| |||| ||||||||||||| ||| ||||||||||||||| ||| |||| |
|
|
| T |
4949904 |
gatgaaaagaaaaggagtattagtgattttcagaatattgggtggatcaaggaggcaatatatttttaaaaccgatccaaa |
4949824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University