View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7912_low_15 (Length: 297)
Name: NF7912_low_15
Description: NF7912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7912_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 31997919 - 31998196
Alignment:
| Q |
1 |
tggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttcatggtaacagttggt |
100 |
Q |
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| T |
31997919 |
tggacgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttcttggtcacagttggt |
31998018 |
T |
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| Q |
101 |
ttgtttatctttctggctctgcataagaattggattttaannnnnnnaatcaaagtcttttgacctatttcactctggagtaattagtttcttacctatt |
200 |
Q |
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| T |
31998019 |
ttgtttatctttctggctctgcataagaattggattttaatttttttaatcgaagtcttttgacctatttcactctggagtaattagtttcttacctatt |
31998118 |
T |
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| Q |
201 |
ggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggata |
278 |
Q |
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| T |
31998119 |
ggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggata |
31998196 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15843043 - 15843120
Alignment:
| Q |
1 |
tggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgct |
78 |
Q |
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|||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| ||||||| |||| ||||| |
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| T |
15843043 |
tggatgtggacttgcatagtaggagatggtcttgttggagggggcaatgtgcctctggagggaagtacattacctgct |
15843120 |
T |
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