View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7912_low_5 (Length: 539)
Name: NF7912_low_5
Description: NF7912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7912_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 522
Target Start/End: Complemental strand, 9802987 - 9802489
Alignment:
| Q |
15 |
tgaaatgaaggtgtggagaatgaaaagagagaagaacggcgtttgcgcttttctacctatgaggttgtaactgctgctgcaaaagtgtaaacaaacgagg |
114 |
Q |
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| T |
9802987 |
tgaaatgaaggtgtggagaatgaaaagaaagaagaacggcgtttgcgcttttctacctatgaggttgtaactgctgctgcaaaagtgtaaacaaacgagg |
9802888 |
T |
|
| Q |
115 |
agtgtggtttttagtgttaactagggttaaaaaggttaaccatggttaaattgctggaagttgagaggtaatagtacgattattatgcttttgttggttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9802887 |
agtgtggtttttagtgttaactagggttaaaaaggttaaccagggttaaattgttggaagttgagaggtaatagtacgattattatgcttttgttggttt |
9802788 |
T |
|
| Q |
215 |
ggtcctagtacgataatctatctaccagtcatctactatgaaccctacaaaatgaaataggagtaggatttattggttcaattcttgtacggatcttggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9802787 |
ggtcctagtacgataatctatctaccagtcatctactatgaaccctacaaaatgaaataggagtgggatttattggttcaattcttgtacggatcttggt |
9802688 |
T |
|
| Q |
315 |
ctcttttttggtgttgctcatggttcaaactccaaactttacctatattactgtattatgttcataccaactgagttaaacttacgaaaacgtatgaatc |
414 |
Q |
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|||||||||||||||||||||||||||| |||| ||| ||| || |||||||||||||| ||||||||||| || | || | |||||||| |
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| T |
9802687 |
ctcttttttggtgttgctcatggttcaacctccgaacattagata--------tattatgttcatactaactgagttaagctcatgaggatgtatgaat- |
9802597 |
T |
|
| Q |
415 |
ttggtctataagtataacttggttaagaaccaccgttaaattttcaattgtgattgtttaaccggtctcattaagggtacttgttaaggatttaaagatg |
514 |
Q |
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|| ||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
9802596 |
tttgtctataagtataacttagttaaaaaccattgttaaattttcaattgcgattgtttaactggtctcgttaagggtacttgttaaggatttaaagatg |
9802497 |
T |
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