View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7913_high_1 (Length: 781)

Name: NF7913_high_1
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7913_high_1
NF7913_high_1
[»] chr1 (2 HSPs)
chr1 (7-763)||(29104066-29104810)
chr1 (7-761)||(29089805-29090547)


Alignment Details
Target: chr1 (Bit Score: 680; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 7 - 763
Target Start/End: Original strand, 29104066 - 29104810
Alignment:
Q  7 atgtcgaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgagatactgcattgtttcctttgtcagggaatgaactccgccgaaatttg 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29104066 atgtcaaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgagatactgcattgtttcctctgtcagggaatgaactccgccgaaatttg 29104165  T
Q  107 ccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgaga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104166 ccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgaga 29104265  T
Q  207 tttaacgactgctattgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctcc 306  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29104266 tttaacgactgctgttgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaagcgaaaaatcttctcc 29104365  T
Q  307 ggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccattcttagaaatctcagcaaaacaagcttctttgatggaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||              
T  29104366 ggctttgatttctttgtttttgcaacgacttcaggaaatcttaaaagtaaaatagctccatccttagaaatctcagcaaaacaagcttct---------- 29104455  T
Q  407 tattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgttgat 506  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29104456 --ttgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcctctaaccaactgttgat 29104553  T
Q  507 tttcatctcaagaacttcccagtccatcttattcatcttcgagaaacttcgttcctccacgtcgagtttataaataccttcatcgacgatggattttctc 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29104554 tttcatctcaagaacttcccagtccatcttattcatcttcgagaaacttcgttcctccacgttgagtttataaataccttcatcgacgatggattttctc 29104653  T
Q  607 accgtggtgtaaactcttatacattcttttccataaccgttttttaccatgcactcagcaataattctcaaatcatccacagcatcggaagaaatgcgtt 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104654 accgtggtgtaaactcttatacattcttttccataaccgttttttaccatgcactcagcaataattctcaaatcatccacagcatcggaagaaatgcgtt 29104753  T
Q  707 cgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcctc 763  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104754 cgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcctc 29104810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 7 - 761
Target Start/End: Original strand, 29089805 - 29090547
Alignment:
Q  7 atgtcgaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgagatactgcattgtttcctttgtcagggaatgaactccgccgaaatttg 106  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||  |  | ||||| |||||||||| | |||| ||||||||||  ||||||||||| |    
T  29089805 atgtcgaagaatatttcagaaagcacgttgctgtaatctgtaagcttggtaagatattgcattgtttgcgttgtaagggaatgaataccgccgaaattcg 29089904  T
Q  107 ccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgaga 206  Q
    ||   ||||||||||| |||||||  ||||  ||||| |||||  | | || ||||| |||| | || |  | ||  ||||| |||||||||||||||||    
T  29089905 ccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaatatttcttacagattcaacgagtctttgttgtgaattatatgcttgaga 29090004  T
Q  207 tttaacgactgctattgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctcc 306  Q
    ||||||  | |   ||||||| || |||||||| ||||||| |||||| ||||||| ||||||||| || |||||||||||||| || ||||||||||||    
T  29090005 tttaacaccagaggttgaattgaaagagaaaatcgattcaacctccggtaacaacatggtgattgtggcatacatatcaagcaaacggaaaatcttctcc 29090104  T
Q  307 ggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccat-tcttagaaatctcagcaaaacaagcttctttgatggaa 405  Q
    ||  |  ||||||||||||| ||||||| |||||||||||  || || | | ||||||||| |||| ||||| ||| |||||||||||||| ||||        
T  29090105 ggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagctccatctctt-gaaatttcaccaaaacaagcttctctgat---- 29090199  T
Q  406 ttattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgttga 505  Q
            ||||||||||||||| ||||| ||||||||||| |||||||| |  ||||| || ||||||||||||||||| || |||||||||| |||||    
T  29090200 --------ggaattcgaagcgaaaattcgttcgcagaggtttctctctccagaaaagagtgttctcactgagatcttaactgcctctaaccaacagttga 29090291  T
Q  506 ttttcatctcaagaacttcccagtccatcttattcatcttcgagaaacttcgttcctccacgtcgagtttataaataccttcatcgacgatggattttct 605  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| | |||||| |||| ||||||||| || || ||||||||    
T  29090292 ttttcatctcaagaacttcccagtccatcttattccccttcgagaaacttcgttcctccacattgagtttgtaaacaccttcatcaacaatcgattttct 29090391  T
Q  606 caccgtggtgtaaactcttatacattcttttccataaccgttttttaccatgcactcagcaataattctcaaatcatccacagcatcggaagaaatgcgt 705  Q
     ||||||||||||||  ||| ||| |||||||| ||||||||    ||||||||||| ||||||||| |||||||||||||  |||||||||||| ||||    
T  29090392 aaccgtggtgtaaacgtttacacactcttttccgtaaccgttagaaaccatgcactcggcaataattttcaaatcatccaccacatcggaagaaacgcgt 29090491  T
Q  706 tcgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcc 761  Q
    || ||||||||||||||||||| |||| || ||  ||| || |||||| |||||||    
T  29090492 tcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtcttccagtgttcc 29090547  T

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