View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7913_high_2 (Length: 600)
Name: NF7913_high_2
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7913_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Original strand, 28786492 - 28787063
Alignment:
| Q |
16 |
caaacaagtacataaggtattatcatctcaaatctcagaaagaaatgacgtataaacttaacttagaaccataccttgatcatgatatttcttctttcct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28786492 |
caaacaagtacataaggtattatcatctcaaatctcagaaagaaatgacgtataaacttaacttagaaccataccttgatcatgatatttcttctttcct |
28786591 |
T |
|
| Q |
116 |
ttatgcatacaccagcaagatataatagtagccaaaagcagaatggcggccccgagtgctgaaccaataatcacatacaattggttcttttttcttctac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28786592 |
ttatgcatacaccagcaagatataatagtagccaaaagcagaatggcggccccgagtgctgaaccaataatcacatacaattggttcttttttcttctac |
28786691 |
T |
|
| Q |
216 |
ctttatgaagaccgttgtttccagagtagctgttgaggacagaaataaaagtagctgtcatacatgtgcaatactacattatgcttaagttcagtatata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28786692 |
ctttatgaagaccgttgtttccagagtagctgttgaggacagaaataaaagtagctgtcatacatgtgcaatgctacattatgcttaagttcagtatata |
28786791 |
T |
|
| Q |
316 |
aaaacaatgctcactttaaaaccaaatctttgctcaaaagttctgacggtacagttccagataacatattgttctggacatacctgcatcagtaataagc |
415 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28786792 |
aaaacagtgctcactttaaaaccaaatctttgctcaaaagttctgacggtacagttccagataacatattgttctggacatacctgcatcagtaataagc |
28786891 |
T |
|
| Q |
416 |
ataatctaatatcaaaacaaaacagtatttagcataatagcttgactactatttaaacatgacttataagagtcagtcatatttgt--gcacacgcgcca |
513 |
Q |
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| T |
28786892 |
ataatctaatatcaaaacaaaacagtatttagcataatagcttgactattatttaaacatgacttataagagtcagtcatatttgtgcgcacacgcgcca |
28786991 |
T |
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| Q |
514 |
attctacgcacataagtgatatttatatgtattgaagtatgccaattttcaatttgataaaacaactgatgt |
585 |
Q |
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| T |
28786992 |
attctacgcacataagtgatatttatatgtattgaagtatgccaattttcaatttgataaaacaactcatgt |
28787063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 316 - 450
Target Start/End: Complemental strand, 12103791 - 12103655
Alignment:
| Q |
316 |
aaaacaatgctcactttaaaaccaaatctttgctcaaaagttctgacggtacagttccagataacatattgttctggacatacctgcatcagtaataagc |
415 |
Q |
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|||||| ||||||||| | || |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| || |||||| |
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| T |
12103791 |
aaaacagtgctcacttaataatcaaatctttgctcaaaagttctgacgatacagttcccgataacatattgttctcgacatacctgcatcggttataagc |
12103692 |
T |
|
| Q |
416 |
--ataatctaatatcaaaacaaaacagtatttagcat |
450 |
Q |
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| T |
12103691 |
atataatctaatatcaaaacaaatgagtaattagcat |
12103655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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