View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7913_high_6 (Length: 388)
Name: NF7913_high_6
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7913_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 23964794 - 23964877
Alignment:
| Q |
166 |
ctgagagaagtcgagattagtgaaaggttaacctcatgtttagttttatgagagtcttacctatgttactttaaacgtcgcgtc |
249 |
Q |
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| T |
23964794 |
ctgagagaagtcgagattagtgaaaggttaacctcatgtttagttttatgagagtcttacctatgttactttaaacgtcgcgtc |
23964877 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 23964729 - 23964795
Alignment:
| Q |
53 |
tcggtaaccactggaagccagtcgtgaaccaactgggaggcataggaggtccgaccaaaaatcaact |
119 |
Q |
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| T |
23964729 |
tcggtaaccactggaagtcagttgtgaaccaacttggaggcataggaggtccgaccaaaaatcaact |
23964795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 23964945 - 23964999
Alignment:
| Q |
317 |
gcagatatataatcggtaattatatagtcttagaggcttattaaacatggtatgt |
371 |
Q |
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| T |
23964945 |
gcagatatataatcggttattatatagtcttagaggcttattaaacatggtatgt |
23964999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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