View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7913_low_10 (Length: 304)
Name: NF7913_low_10
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7913_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 13519356 - 13519258
Alignment:
| Q |
175 |
gcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13519356 |
gcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
13519258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 13608889 - 13608791
Alignment:
| Q |
175 |
gcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608889 |
gcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
13608791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13519534 - 13519473
Alignment:
| Q |
1 |
ccttcaatcttacttaaaacaacctatggctctccattctcccacataattaatatccccct |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13519534 |
ccttcaatcttacttaaaacaacctatggctctccattctcccacataattaatatccccct |
13519473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13609069 - 13609008
Alignment:
| Q |
1 |
ccttcaatcttacttaaaacaacctatggctctccattctcccacataattaatatccccct |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13609069 |
ccttcaatcttacttaaaacaacctatggctctccattctcccacataattaatatccccct |
13609008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University